eif3b (eif3b,eif3ba,LOC107703402,LOC107674692)


Basic Information

Item Value
gene id eif3b
gene name eif3b,eif3ba,LOC107703402,LOC107674692
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 35356753 ~ 35372601 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022683382.1
TCGAAAAAAGGGGGAGACATAACTAGAACAGCATTTGGACAGGTTTTACACCAGTTTGACTCAAAATAAGCAGGGGGGTTCGCGCCGGCGGCACCGCACATGGTCCTGCGAGGAAAAACGCTGGATTACGGTTTTTAACACCCGCGAATCGCGCTAATCGCCCGGTATTGTCCACAGCGAAGCCTCGATGAGAGATACGGAGGATATGGACGCAGAGCTGGAGTTTGATGAAGGCGAGGAGCCTTCGTTCAGCGACCCGGAGGACTTCGAGGATGATATCAGTGATTCGGAGCTGCTGGGAGACATCCTCAGGGAGAAACCTCAGGAGGCTGATGGTATCGACTCGGTCGTTGTCGTTGACAATGTTCCTCAAGTAGGACCAGACCGTCTGGAGAAACTCAAGAATGTCATCCACAAGATCTTCTcaaaatttggcaaaatcacCAACGAGTTCTACCCAGAAGCAGACGGCAAGACCAAGGGgtacattttccTTGAGTATTCTGTTCCAAGTCACGCACACGAAGCTGTGAAGAACGCTGACGGCTACAAATTGGATAAGCAGCATACTTTCCGTGTCAACCTGTTCACTGACTTTGACAAGTACATGTCAATCAGTGATGAATGGGAACCTCCTGAGAAACAACCCTTCAAAGATTTTGGAAATCTGCGCCACTGGATGGAGGAACCGGACTGCCGTGATCAGTACAGCGTGATCTACGATTCTGGGGAAAAGACTGGCATATTTTCCAATGATGTCAAGGAGCCTATTGAAGTTGAGGAGAGAGcgCGGTGGACAGAGACGTACGTGCGCTGGTCTCCTAAAGGCACCTACCTTGCCACGTTTCATCAAAGAGGCATCGCGCTGTGGGGTGGCGAGAAGTTCAAACAGATCCAGAGGTTCAGCCATCAGGGGGTCCAGCTTATTGACTTTTCCCCATGTGAGAGgtATGTGGTTACATTTAGTCCCCTAATGGACACAAAGGATGACCCACAAGCCATTATCATCTGGGATGTTCTGACTGGTCAGAAGAAGAGAGGCTTCCATTGTGAGAGCTCTGCCCATTGGCCAATTTTCAAgtgGAGTCCAGATGGGAAATTCTTTGCCAGAATGACTCAAGACACCCTCAGCATCTACGAAACACCATCAATGGGTCTTTTGGATAAGAAGAGTTTGAAGATAAATGGAATTAAGGATTTCTCCTGGTCCCCCGGTGATAACGTCATTGCCTTCTGGGTGCCTGAAGATAAAGACATCCCGGCGAGGGTGACCCTCATGCAACTTCCATCCAGGAACGAGATCAGAGTACGCAATCTGTTCAATGTGGTGGACTGCAAGCTTCACTGGCAGAAGAACGGCGACTATCTTTGCGTAAAGGTGGACAGGACTCCTAAAGGAACACAGgGAATTGTCACAAACTTTGAAATCTTCAGGATGAGGGAGAAGCAGGTTCCTGTGGATGTTGTGGAAATGAAAGAGGGCATCATTGCTTTTGCCTGGGAGCCCAATGGTAGCAGGTTTGCGGTGCTGCATGGCGAGTCCCCCAGAATCAATGCCTCATTTTATCACGTGAAGAGCAATGGCAAGATCGACCTGATCAAAATGTTTGACAAACAGCAGGCAAACAGCATTTTCTGGAGCCCACAGGGTCAGTTCCTGGTATTGGCTGGATTGAGGAGTATGAATGGCGCTCTGGCGTTTGTGGACACCTCTGACTGCACCCTGATGAACATTGCTGAGCATTACATGGCCTCAGATGTGGAGTGGGATCCAACTGGCAGATTTGTGGTGACCTCTGTCTCTTGGTGGAGCCACAAGGTGGACAATGCCTTCTGGCTGTGGACGTTTCAGGGTCGTTTGCTGCAAAAGAACAACAAAGACCGCTTCTGCCAGCTGCTGTGGAGGCCTCGGCCACCCTCTCTGCTCTCTCAGGAGCAGATAAAGGCCATCAAGAAGGACCTGAAGAGGTACTCCAAGATCTTTGAGCAGAAGGATCGACTCAGCCAGTCCAAGGCTTCAAAGGACCTGGTTGACAAAAGACGCGGGATGATGGATGAGTATCGCACGTACCGCGAAGCTGCCATGAAGATGTACCAGGAGCAGAGACCTCTCCGCCTCGAGCTCAGAGGAGGTGTGGATACTGATGAATTGGACAGCAATGTCGATGACTGGGAGGAGGAGACCATTGAGTTTTTCATCAATGAAGAAATCATTCCAATCGGCGATCTGTAGTCCCAAAAGcagagcagttttatttttgagGAGTGAGAGATTGCAGTGGAGGGAAACGAAATCGggcatctctctctcctctgcatATTCCTTGTTAACATCCAGCCAAGTGCCTTTTAATACTGGTTGCTGTGGAAGGAGAATTTCGTGCCGCTGTTGTTGCTTTTACCACCATATCCAGCTCTGGGAGTCGCCACCCTGCGCCacccatcccaccccaccccaccttGACCTGCGGGCCACCACGGGTCTACCCTCTGGTTCTTGCCTTTTTGAGTTGAACTTTTACTTCTTCAGAAGGCCGTGGCCATGACCCAGCATGCCCTGACGCGTTGTTTTTACATCCCCACGTGGAAGGAAGACGTTTTGTTTCCACAGATTTTCCTCGAAATGAATATGTACTCTAGCGTGCACTACAGTGGGCTGTATCCTCCTCCATTCAGATTACCTGGTATTAAATGCACAACAAGGTAATAAAGTATGAAACAAATTTATCCTTTTGTCAGATGATGATCTCTCAATAAAACTGAAAGCCGGTGTCTGAA
>XM_022683383.1
CTCGAAAAAAGGGGGAGACATAACTAGAACAGCATTTGGACAGGTTTTACACCAGTTTGACTCAAAATAAGCAGGGGGGTTCGCGCCGGCGGCACCGCACATGGTCCTGCGAGGAAAAACGCTGGATTACGGTTTTTAACACCCGCGAATCGCGCTAATCGCCCGGTATTGTCCACAGCGAAGCCTCGATGAGAGATACGGAGGATATGGACGCAGAGCTGGAGTTTGATGAAGGCGAGGAGCCTTCGTTCAGCGACCCGGAGGACTTCGAGGATGATATCAGTGATTCGGAGCTGCTGGGAGACATCCTCAGGGAGAAACCTCAGGAGGCTGATGGTATCGACTCGGTCGTTGTCGTTGACAATGTTCCTCAAGTAGGACCAGACCGTCTGGAGAAACTCAAGAATGTCATCCACAAGATCTTCTcaaaatttggcaaaatcacCAACGAGTTCTACCCAGAAGCAGACGGCAAGACCAAGGGgtacattttccTTGAGTATTCTGTTCCAAGTCACGCACACGAAGCTGTGAAGAACGCTGACGGCTACAAATTGGATAAGCAGCATACTTTCCGTGTCAACCTGTTCACTGACTTTGACAAGTACATGTCAATCAGTGATGAATGGGAACCTCCTGAGAAACAACCCTTCAAAGATTTTGGAAATCTGCGCCACTGGATGGAGGAACCGGACTGCCGTGATCAGTACAGCGTGATCTACGATTCTGGGGAAAAGACTGGCATATTTTCCAATGATGTCAAGGAGCCTATTGAAGTTGAGGAGAGAGcgCGGTGGACAGAGACGTACGTGCGCTGGTCTCCTAAAGGCACCTACCTTGCCACGTTTCATCAAAGAGGCATCGCGCTGTGGGGTGGCGAGAAGTTCAAACAGATCCAGAGGTTCAGCCATCAGGGGGTCCAGCTTATTGACTTTTCCCCATGTGAGAGgtATGTGGTTACATTTAGTCCCCTAATGGACACAAAGGATGACCCACAAGCCATTATCATCTGGGATGTTCTGACTGGTCAGAAGAAGAGAGGCTTCCATTGTGAGAGCTCTGCCCATTGGCCAATTTTCAAgtgGAGTCCAGATGGGAAATTCTTTGCCAGAATGACTCAAGACACCCTCAGCATCTACGAAACACCATCAATGGGTCTTTTGGATAAGAAGAGTTTGAAGATAAATGGAATTAAGGATTTCTCCTGGTCCCCCGGTGATAACGTCATTGCCTTCTGGGTGCCTGAAGATAAAGACATCCCGGCGAGGGTGACCCTCATGCAACTTCCATCCAGGAACGAGATCAGAGTACGCAATCTGTTCAATGTGGTGGACTGCAAGCTTCACTGGCAGAAGAACGGCGACTATCTTTGCGTAAAGGTGGACAGGACTCCTAAAGGAACACAGgGAATTGTCACAAACTTTGAAATCTTCAGGATGAGGGAGAAGCAGGTTCCTGTGGATGTTGTGGAAATGAAAGAGGGCATCATTGCTTTTGCCTGGGAGCCCAATGGTAGCAGGTTTGCGGTGCTGCATGGCGAGTCCCCCAGAATCAATGCCTCATTTTATCACGTGAAGAGCAATGGCAAGATCGACCTGATCAAAATGTTTGACAAACAGCAGGCAAACAGCATTTTCTGGAGCCCACAGGGTCAGTTCCTGGTATTGGCTGGATTGAGGAGTATGAATGGCGCTCTGGCGTTTGTGGACACCTCTGACTGCACCCTGATGAACATTGCTGAGCATTACATGGCCTCAGATGTGGAGTGGGATCCAACTGGCAGATTTGTGGTGACCTCTGTCTCTTGGTGGAGCCACAAGGTGGACAATGCCTTCTGGCTGTGGACGTTTCAGGGTCGTTTGCTGCAAAAGAACAACAAAGACCGCTTCTGCCAGCTGCTGTGGAGGCCTCGGCCACCCTCTCTGCTCTCTCAGGAGCAGATAAAGGCCATCAAGAAGGACCTGAAGAGGTACTCCAAGATCTTTGAGCAGAAGGATCGACTCAGCCAGTCCAAGGCTTCAAAGGACCTGGTTGACAAAAGACGCGGGATGATGGATGAGTATCGCACGTACCGCGAAGCTGCCATGAAGATGTACCAGGAGCAGAGACCTCTCCGCCTCGAGCTCAGAGGAGGTGTGGATACTGATGAATTGGACAGCAATGTCGATGACTGGGAGGAGGAGACCATTGAGTTTTTCATCAATGAAGAAATCATTCCAATCGGCGATCTGTAGTCCCAAAAGcagttttatttttgagGAGTGAGAGATTGCAGTGGAGGGAAACGAAATCGggcatctctctctcctctgcatATTCCTTGTTAACATCCAGCCAAGTGCCTTTTAATACTGGTTGCTGTGGAAGGAGAATTTCGTGCCGCTGTTGTTGCTTTTACCACCATATCCAGCTCTGGGAGTCGCCACCCTGCGCCacccatcccaccccaccccaccttGACCTGCGGGCCACCACGGGTCTACCCTCTGGTTCTTGCCTTTTTGAGTTGAACTTTTACTTCTTCAGAAGGCCGTGGCCATGACCCAGCATGCCCTGACGCGTTGTTTTTACATCCCCACGTGGAAGGAAGACGTTTTGTTTCCACAGATTTTCCTCGAAATGAATATGTACTCTAGCGTGCACTACAGTGGGCTGTATCCTCCTCCATTCAGATTACCTGGTATTAAATGCACAACAAGGTAATAAAGTATGAAACAAATTTATCCTTTTGTCAGATGATGATCTCTCAATAAAACTGAAAGCCGGTGTCTGAA

Function

symbol description
eif3ba Predicted to enable RNA binding activity and translation initiation factor binding activity. Predicted to contribute to translation initiation factor activity. Acts upstream of or within heart rudiment development and neural crest cell development. Predicted to be located in cytoplasm. Predicted to be part of eukaryotic translation initiation factor 3 complex. Orthologous to human EIF3B (eukaryotic translation initiation factor 3 subunit B).
eif3b Enables RNA binding activity. Contributes to translation initiation factor activity. Involved in several processes, including IRES-dependent viral translational initiation; translational initiation; and viral translational termination-reinitiation. Located in extracellular exosome. Part of eukaryotic translation initiation factor 3 complex.

NR:

description
PREDICTED: eukaryotic translation initiation factor 3 subunit B

GO:

id name namespace
GO:0001731 formation of translation preinitiation complex biological_process
GO:0006446 regulation of translational initiation biological_process
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0031369 translation initiation factor binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
K03253 EIF3B; translation initiation factor 3 subunit B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022683382.1 True 2778 mRNA 0.49 20 35356754 35372601
XM_022683383.1 False 2774 mRNA 0.49 20 35356753 35372601

Neighbor

gene id symbol gene type direction distance location
gna12 gna12,gna12a,LOC107674729,LOC107758336,LOC107703403,LOC107753491 coding upstream 20674 35263070 ~ 35336079 (+)
card11 card11,LOC107592484 coding upstream 119119 35144275 ~ 35237634 (+)
mmd2 mmd2,mmd2a,LOC107748164,LOC107674702,LOC107720066,LOC107581716 coding upstream 1034894 34286087 ~ 34321859 (+)
arpc1b arpc1b,LOC107720102,LOC107591785,LOC107674599,LOC107581715 coding upstream 1085422 34256564 ~ 34271331 (+)
arpc1a arpc1a,LOC107674705,LOC107591778,LOC107720063,LOC107703414 coding upstream 1100637 34246152 ~ 34256116 (+)
chst12 chst12,chst12a,LOC107758335,LOC107674724 coding downstream 5050 35377651 ~ 35386085 (+)
lfng lfng,LOC107674646,LOC107703400,LOC107758333 coding downstream 229000 35601601 ~ 35615811 (+)
snx8 snx8,LOC107758331,LOC107592787 coding downstream 402427 35775028 ~ 35799000 (+)
mrm2 mrm2 coding downstream 438436 35811037 ~ 35818586 (+)
zfand2a zfand2a,LOC107568938 coding downstream 1193606 36566207 ~ 36580371 (+)
G202068 NA non-coding upstream 7904 35347380 ~ 35348849 (+)
G202067 NA non-coding upstream 10299 35337122 ~ 35346454 (+)
G202061 NA non-coding upstream 143088 35210332 ~ 35213665 (+)
G202060 NA non-coding upstream 190041 35166116 ~ 35166712 (+)
G202046 NA non-coding upstream 247930 35108594 ~ 35108823 (+)
G202071 NA non-coding downstream 135 35372736 ~ 35373535 (+)
G202076 NA non-coding downstream 17294 35389895 ~ 35392670 (+)
G202081 NA non-coding downstream 33017 35405618 ~ 35405852 (+)
G202086 NA non-coding downstream 40956 35413557 ~ 35413789 (+)
G202127 NA non-coding downstream 68685 35441286 ~ 35441561 (+)
LOC111195488 NA other upstream 232135 35106038 ~ 35124618 (+)
psmg3 psmg3 other upstream 1541767 33811432 ~ 33814986 (+)
G201466 LOC102799139,LOC107581721 other upstream 2081846 33260173 ~ 33274907 (+)
bud31 bud31,LOC107737741,LOC107720055 other upstream 2378843 32974320 ~ 32977910 (+)
G201445 flii,LOC107581766,LOC107737969,LOC107703428,LOC107674686 other upstream 2428834 32923528 ~ 32927919 (+)
G202336 NA other downstream 1216847 36589448 ~ 36940279 (+)
LOC103041887 NA other downstream 1610722 36983323 ~ 36993332 (+)

Expression


Co-expression Network