LOC103045472 (LOC108433148,LOC107727127,LOC107674682,LOC107745580,LOC799265,LOC105013234,LOC106607346)
Chromosome Information
Item |
Value |
chromosome id |
NC_035919.1 |
NCBI id |
CM008322.1
|
chromosome length |
38085671 |
location |
37010695 ~ 37025525 (+) |
genome version |
Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
Sequence
>XM_022683398.1
TAGAAAGTTTGAAAGTTGTAGAGGAGGTTATTGAACGCGGCATTTTAGCTTATCCTCCACTTCTAGTTAACCTACATTTGTTTCTCAGTTTAGCGCAGTTTTAACAGGTTATACGGCTATTTTGAGAGCAAGTATAGGCTTGAAAAGcgattaaataacttttaaccaGGAGGATAAGTGTTTAATAAGCTGCAAAGGAAGCTGTGCTGCTGAGAAGCCACGCTGTTAGTCCAGTAACTGCAATGTTTACAGGTTTTGGGCTCAGTAGTAGTATAGACGCTCCAGCATTTCTGGCTTTCctgagctggagctgctgtAGTTTCCTgtagttttctgtagtttaggtCTGTGCTGTAGTTGTTTAAGACATTAATATTGAGCAGGATTCAGGATTTTGGACGCACATAAAGAGAAACAAGGATGTGTGACATCAGGACTTATAATGTGGTCATTCTGGGCATTGGATTTCTATTCATTTTCACTGCCTTCACCACCTGTGGCAATATAGAACAAACTGTGGTGAAAAGTCTGGACAATGCTACTTTTACTGGAAGTGGTTATCACAGCCTCGGGATTATATATGGAATTTTTTCATTTGCTAATTTATTAGCTCCCCCTGTTGTAACAGTAATCGGACCACGTTTTACAATGTTCTTCAGTGGAATTCTTTACAGTGGTTATATAGCTGTATTCATTAATCCATGGACCTGGTCCTTTTACTTCACCTCAGTGCTAATTGGTATCGGAGCAGCTCtgCTTTGGACAGCTCAAGGACACTTTCTGGTGGAGAACTCTGATGCCTCCACCATTAACAGGAACACTGGGTTGTTTTGGGCTTTGTTGCAGTGCAGtatgCTGTTTGGTAATCTCTATGTTTATTTAGACTGGAAAGGAAAATCTGAAATTTCAGATGGAGACAGGAGGATTATGTTTATTGCTCTGCTGGTCACCTCTGTAATCGGCACTCTGAGCTTCCTGATCCTGAGAAGATCACAGCAGCTGGAGGACGAGGTTCTGTCTGAGGAAGAGGGACGATCCTTATTGTCATCTAGGTTAATATATAAGCAGCGAGCCAACTCTGCTATAAATGATGCCAAAGCAGAATTCAagacTATTTTGCACCTTTTTGGGACAAAAACAATATTACTCCTTGCCTGTTGCATGGCATACAGTGGTCTGGAGCTCTCTTTTTACAGCGGTGTGTACGGAACTTGCATTGGAGCAACAAGTCAGTTCGGTGATGGAGCCAAAGCTTTGATTGGGATTTCAGGGATTGTGGTGGGATTTGGAGAAATAATTGGTGGGGGTCTGTTTGGGCTCATTTTGAAAAATAACCGGTTTCGGCGCACGTCAGTCGTCTTCCTCGGTATGGTGGTTCATTTTGTGGCCTTCTACCTGATCTTCCTCAACATACCAGATGATGCTCCAGTGGCGTTTAAAAGCAGCACGCAGGAGAAGCCTTATCTGTCACCAAGTGTCTCCATTGCTATGCTGTGCAGCTTCCTGCTTGGACTCGGAGACAGCTGCTTCAACACTCAGCTATACAGCATTCTGGGCAGAGTTTACACTGAGCAAAGCGCACCAGCCTTTGCCATCTTCAAGTTTATTCAGTCTATCTTTGCAGCAGTGGCTTTCTTCTACAGTGGCTACCTCCTGCTGACCTGGCAGCTCCTGATCATGGTCATCCTGGGCTTTATAGGCACCCTGTGCTTCTTCATGGTGGAGAGGATGCAGAATGTCTCGGCTGATTTGCCAGAATACTAGATCTTCTAgtaacataattattttttatacagggTGTTTGCAAGGCAAATGTATTTGGACTGTTTTCCGTAACCTGGGGAATCACCCTgtttcactctcacacactgcttcagTGACTCTTCTGTTCCTGAGCTCTTATGAAACACTAACTCATCAGAGCttcagctttattttatttgcattgatAATTTGCTAAAGGTGCTCTTTGTGTGGGATGCTTTTGACAAAACTCATCATTCCTGGGTTGGACTGTATGATCCATTATAATAATCAATTGCAAAACCatagaataattttaaatatcttttaaaaGTAGTATCTGTCAGTTTTAAAGGTGGCACATTTTTTTcaatcattatttttaactCAACACTAAAGATACTAGCACACAAATCAAGCACAAcaatatggtatggtatggctAATCAGGTatgtgaaaaaaattataatgccTTAGTTTTTTGTGCTTTGCCCCTAAATGTCTCAGGGTTCAGATCACTTCaagatacagtgttaaataaatttctatttttctcttctctaaaaataaaaacgtttggttatgCACGTTATCCATGTTGTAAAATGTAGGCCCCATCACGataactatttttaattttatttttatttttattactagtTTTGTTGTTCCAGAAATATTTGCGATAAAAAAGATTATTGTCATTATTGTCAAATGTCACGATATGACTTTTTAAGTGCAAAAAATGCAGTTctattaatttaaagaataataaatttaaattcacagacgcctcgtgctgattgacatcaccctaggagtgatgaggggaaagagcgccatctacccacccagagagagcaagcccaattatgctctctcagggctctggcagctgatggcaagctgcatgaccgggattcacaCCTGTGATCTCCCTTCattgtggcagcgctttagactttTGGACCACTTAGCGCCcctaattttttaatttttggaaatatatatagatggttaagttagaatattttaaaatatatcctaaatactctaaatgtaaataaaattataccaCTTAGCTCATTCACAATAATTAGTCTCCCTAATAATCatcttatttttacttaatgATAACTTAATAACATAACTATCATGACTGGCCTAATAAAATGCACTGCCTATATTGtacttattattgttattactttaaactacatttatatattttgcatacTATTATTTGAGTTGAGTAAcctgtattttattgttaattgttCTGATTAGAGTTTTAACATGCAAAAACGACTCAGATACACTCAGTTAAAAGGAcagtaaggtttttttttaccaaagacACACATATATGAGGGTTTTTAAAGGTATAAAAAAGATGGACCATGGCAATATATaggaagtagaagaagaaattTAGAGTGTCATATGTACAGtgtcatgccaaaagtcatgggacagtaaCTGGTCTCATGTAAAGAATGCTGTACTGGATGTGTGATATGTGGATATGTTGTTCCCTGAGAGAACAATTCATAATTCGTAGGCATActcttgtcccatgacttttggcatgtcagtgattttttttgcgcacagttaaaaaaaacataattcagtattttattgtttaagaaAATCCAGGGTTTTCAAAAATGTACAATACTTAAATAACCAGCATTAAAATTTCAGTGCTTAACTCGAAGTTGTATAATAACTATGCAATGATTAACAGTAATTAGTGTCTtgtgaatgtattttatttatatttactaataTACCAGCATTTCTCTGTTAGTATTCCAGCTGTATGATCTTGTTAACTGACAATCAATTGTATTGAGTTTAGTGTTTTATACATAATCATTTCAGTGAGGTAAAGTATATGCTGTATATGTGATGAACTGTATTTGTTGTATTGTGTATATGTTGTTTCCGTGCACTTTGTTTGTGTATTTCAGGTCCAAAGTTCAATAAAGAATCGCAAGTTATTGCAAGGTAA
Function
NR:
description |
PREDICTED: UNC93-like protein MFSD11 |
GO: NA
KEGG: NA
RNA
RNA id |
representative |
length |
rna type |
GC content |
exon number |
start site |
end site |
XM_022683398.1 |
True |
3761 |
mRNA |
0.38 |
13 |
37010695 |
37025525 |
Neighbor
gene id |
symbol |
gene type |
direction |
distance |
location |
zc3h7a |
zc3h7a
|
coding |
upstream |
36843 |
36951907 ~ 36973852 (+) |
trnat-cgu_1 |
NA
|
coding |
upstream |
132801 |
36877823 ~ 36877894 (+) |
LOC103040671 |
galr2b,LOC103040671,LOC108433115,LOC107674614,LOC107753547,LOC107564701,LOC107703387
|
coding |
upstream |
332773 |
36651834 ~ 36677922 (+) |
zfand2a |
zfand2a,LOC107568938
|
coding |
upstream |
430324 |
36566207 ~ 36580371 (+) |
mrm2 |
mrm2
|
coding |
upstream |
1192109 |
35811037 ~ 35818586 (+) |
nsmce1 |
nsmce1
|
coding |
downstream |
62676 |
37088201 ~ 37096868 (+) |
LOC103021790 |
LOC103021790,LOC108433116,LOC103481129
|
coding |
downstream |
981996 |
38007521 ~ 38058413 (+) |
LOC111195542 |
NA
|
non-coding |
upstream |
95957 |
36881360 ~ 36914738 (+) |
G202341 |
NA
|
non-coding |
upstream |
338279 |
36671991 ~ 36672416 (+) |
G202311 |
NA
|
non-coding |
upstream |
494767 |
36515648 ~ 36515928 (+) |
G202307 |
NA
|
non-coding |
upstream |
540446 |
36409580 ~ 36470249 (+) |
G202270 |
NA
|
non-coding |
upstream |
764052 |
36243616 ~ 36246643 (+) |
G202394 |
NA
|
non-coding |
downstream |
5698 |
37031223 ~ 37032350 (+) |
G202400 |
NA
|
non-coding |
downstream |
11863 |
37037388 ~ 37037645 (+) |
G202405 |
NA
|
non-coding |
downstream |
33993 |
37059518 ~ 37060161 (+) |
G202406 |
NA
|
non-coding |
downstream |
35730 |
37061255 ~ 37063186 (+) |
G202483 |
NA
|
non-coding |
downstream |
109201 |
37134726 ~ 37134983 (+) |
LOC103041887 |
NA
|
other |
upstream |
17363 |
36983323 ~ 36993332 (+) |
G202336 |
NA
|
other |
upstream |
70416 |
36589448 ~ 36940279 (+) |
LOC111195488 |
NA
|
other |
upstream |
1886077 |
35106038 ~ 35124618 (+) |
psmg3 |
psmg3
|
other |
upstream |
3195709 |
33811432 ~ 33814986 (+) |
G201466 |
LOC102799139,LOC107581721
|
other |
upstream |
3735788 |
33260173 ~ 33274907 (+) |
Expression