LOC111195551


Basic Information

Item Value
gene id LOC111195551
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 10180453 ~ 10181232 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022683420.1
ATGTTAGAGCCACATAACATTCCCTCTGAGGTTGGCATTGGAGGGGAGGTAGGGCCCTGGCCTGTACACCTAGTGAGCAGCTTAGAAGCTGAGCATTCTAGCTCTAGTGATGATGCTTTCCATTCAAAGCTGTGTACATTGCTAAGGCAGGAAGGCAAGTCTCTGGATGATGTAGTGTCCCTAGCTAAGGGAAATCAACACCCTAAAGCTGACCTAAGTGCAGATCTAGTGAACGCTATAGGCAAACTGATTGACAAGTGTGGTCAGACAGCCTCTGATGGGCTTAGCTACAGAAAGTTAAGGATGTTCTCAGGATTTAGACCTGTTCCCCCAGGTGAGGAGGAGTACGAAATCTGGTCAGAGCAAGCTAATCAAATGGTCAGTGAATGGCAGTGTGGGGAGGCAGCAAAGAAACAGTGCATTGTAGAAAGCTTGAAAGGGCCAGCTGCTGATATTATTAGGTTTCTAAAAGTTAGCAACCCTTCCGCCACTGTTACAGACTACTTGGCTGCTCTTGACACCGCTTATGGCACTACAGAAAATGGGACAGATTTAATGGTAAAGTTTCGGCACACCTACCAAGAGAAGGGGGAAAAGCTGTCCAGTTTTCTGTACCGACTGGATAAACTTCTCCATCAGGCTCTGTCTAAAGGAGGGATTGAAGCTGCCAACTTGAATAAAACCCGAATGGAGCAGCTGGTGAAGGGTGCTCTTTCTGACGACATGGTCGCTCTCAGGCTCATGCTTTGCGAGAACCCCCTTCCTTTTCCCAACTGCTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022683420.1 True 780 mRNA 0.48 1 10180453 10181232

Neighbor

gene id symbol gene type direction distance location
LOC103044437 trim46,trim46b,LOC108437912,LOC108272350,LOC107589413,LOC107750805,LOC107693334 coding upstream 166156 9986802 ~ 10014297 (+)
LOC103047595 cers2,LOC103047595,LOC108437916,LOC107750802,LOC107599505,LOC107693338,LOC107678801,LOC107739494 coding upstream 502633 9642177 ~ 9677820 (+)
LOC103027509 NA coding upstream 589543 9560563 ~ 9590910 (+)
LOC111195503 NA coding upstream 621346 9544700 ~ 9559107 (+)
LOC103023391 hcn3,LOC108437924,LOC107739502,LOC107656480,LOC107599514 coding upstream 831736 9339117 ~ 9348717 (+)
trnap-ugg_5 NA coding downstream 33759 10214991 ~ 10215062 (+)
trnap-agg_7 NA coding downstream 33916 10215148 ~ 10215219 (+)
trnap-agg_8 NA coding downstream 34117 10215349 ~ 10215419 (+)
trnap-ugg_6 NA coding downstream 34432 10215664 ~ 10215736 (+)
trnap-agg_9 NA coding downstream 34763 10215995 ~ 10216065 (+)
G196534 NA non-coding upstream 49689 10130502 ~ 10130764 (+)
G196531 NA non-coding upstream 95678 10081012 ~ 10084775 (+)
G196473 NA non-coding upstream 252137 9901167 ~ 9928316 (+)
G196467 NA non-coding upstream 379090 9786060 ~ 9801363 (+)
G196464 NA non-coding upstream 406684 9773508 ~ 9773769 (+)
G196570 NA non-coding downstream 62909 10244141 ~ 10248266 (+)
G196572 NA non-coding downstream 80342 10261574 ~ 10261843 (+)
G196573 jupb,LOC108438403,LOC107562513,LOC107666348,LOC107665165,LOC107549862 non-coding downstream 81805 10263037 ~ 10263379 (+)
G196618 NA non-coding downstream 288566 10469798 ~ 10470148 (+)
G196619 eif1b,LOC103043673,LOC107549864,LOC107666344,LOC107665169 non-coding downstream 300175 10481407 ~ 10484765 (+)
dpm3 dpm3,LOC107678800,LOC107693280,LOC107750811 other upstream 119354 10058139 ~ 10061099 (+)
LOC103026923 si:ch211-39a7.1,LOC108437914,LOC107599586,LOC107678794,LOC107750809,LOC107693335,LOC107739611,LOC108273254,LOC107589479 other upstream 292236 9774379 ~ 9888217 (+)
G196419 NA other upstream 439685 9740359 ~ 9740768 (+)
G196415 NA other upstream 459183 9720783 ~ 9721270 (+)
LOC103046684 LOC106605923,LOC107589412,LOC107582081,LOC107699547,LOC108429942 other upstream 475744 9700740 ~ 9704709 (+)
G196633 NA other downstream 310314 10491546 ~ 10492101 (+)
samd14 samd14 other downstream 829809 11011041 ~ 11031269 (+)
mrpl24 mrpl24,LOC107559719,LOC107669969,LOC107693309,LOC107580210 other downstream 1220923 11402155 ~ 11417703 (+)
polr2k NA other downstream 1370428 11551660 ~ 11554583 (+)
grhl2 grhl2,LOC107748368,LOC107550099,LOC107738316,LOC107698657,LOC107672862,LOC107552317 other downstream 1506167 11687399 ~ 11746235 (+)

Expression


Co-expression Network