LOC103030231


Basic Information

Item Value
gene id LOC103030231
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 13902767 ~ 13905038 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022683430.1
ATGGTCTGGTTCAGCCAGGTTTCTGTGAGACAAATCACAGCGCAGTTCCTCATCTCTTCAGAAACACTCATCCTCAGCCGCAGCAGGTCCAGCTTGTTCTCCAAAGAGCGGACGTTAGAGAGGAAAAGCGATGGAATCGGTGaaaaatgtgGACGTTGTGGGGAAGGGTGGAGGCCTTTTGGTGTGAAGTGTTACTTCTTCTCCACTGATTTCCTGAACTGGACGAACAGTAGAGATCGCTGTGTTGAGAAAGGAGGACATCTGGCTATAATAACCAGCCAAGCTGAACAGaCTTTTGTGACTATGCATCTTCGAGGACCTCACTGGTTCGGGCTGAATGATTTGGAGACGGAGGGAAAGTGGATGTGGGTGAACAACCAGCCCCTGACTGATACAGGAGTAACATTCTGGAATAAGGGTAAGGATGGAGCAAGTCAGCCGAATAACAGGAAAGATGAAGATCCTTCAGGAGAGAACTGTGCTAGTCTGGGAAATGAAAATGGTGATTTTACAAAATGGTTTGATGGTTCCTGCAGTAAAACGAGACAATACCTCTGTGAAATGTAAGATACTTATCAGATGTAATCATGGGACTTCAGCTTTAAACACTgcttaaaaaatcttaaaatcatCTTCTTTTTTGGAGGTGTCTTGCTCTTTTACCTGATGATTTAATGTTTAAGTGTATCAATAATAGACGTTCTTGCTCCAATCAGTGTTTTGTAAAAGTTTTTATAGCATACCTGtcaaattttagattaaaaaataagggatattttcctctgtccgcttaaagtcgtcccaccagcccaacg

Function

GO:

id name namespace
GO:0045954 positive regulation of natural killer cell mediated cytotoxicity biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022683430.1 True 815 mRNA 0.43 4 13902767 13905038

Neighbor

gene id symbol gene type direction distance location
LOC103039331 si:dkeyp-92c9.3,LOC108273295,LOC107672858,LOC107702514,LOC106570358,LOC107738593,LOC108411155,LOC107731552,LOC107571466 coding upstream 108655 13670343 ~ 13794112 (+)
LOC103043039 NA coding upstream 236439 13659887 ~ 13666328 (+)
LOC103042421 NA coding upstream 434664 13463299 ~ 13468103 (+)
LOC103036495 NA coding upstream 439531 13454703 ~ 13463236 (+)
LOC103036187 LOC103036187,LOC108441814 coding upstream 455544 13439492 ~ 13447223 (+)
LOC111195557 NA coding downstream 81999 13987037 ~ 13988938 (+)
col28a1 NA coding downstream 396872 14301910 ~ 14339402 (+)
sdhaf3 sdhaf3 coding downstream 445019 14350057 ~ 14364677 (+)
jarid2 jarid2 coding downstream 1172506 15077544 ~ 15259664 (+)
mylip mylip,mylipa,LOC107754815,LOC107731572,LOC107694366 coding downstream 1495885 15400923 ~ 15434466 (+)
G197487 NA non-coding upstream 2348 13898963 ~ 13900419 (+)
G197480 NA non-coding upstream 26115 13869546 ~ 13876652 (+)
G197459 NA non-coding upstream 184765 13717286 ~ 13718002 (+)
LOC103039008 NA non-coding upstream 244114 13653684 ~ 13658653 (+)
G197410 NA non-coding upstream 296809 13586233 ~ 13605958 (+)
LOC111195567 NA non-coding downstream 9046 13914084 ~ 13917087 (+)
G197495 ptp4a3,LOC103031245,LOC108413163,LOC107702466,LOC107571462,LOC108272580,LOC107598212,LOC107738588,LOC107731571 non-coding downstream 12310 13917348 ~ 14032282 (+)
G197496 NA non-coding downstream 41476 13946514 ~ 13972743 (+)
G197547 NA non-coding downstream 164766 14069804 ~ 14074420 (+)
G197550 NA non-coding downstream 222393 14127431 ~ 14139128 (+)
G197334 LOC108441809 other upstream 540109 13324386 ~ 13362658 (+)
s100a14 s100a14,LOC108442988 other upstream 938418 12956670 ~ 12964349 (+)
LOC103029421 NA other upstream 974240 12889358 ~ 12928527 (+)
G197106 NA other upstream 1128271 12715368 ~ 12774496 (+)
grhl2 grhl2,LOC107748368,LOC107550099,LOC107738316,LOC107698657,LOC107672862,LOC107552317 other upstream 2156532 11687399 ~ 11746235 (+)
rpa3 NA other downstream 371753 14276791 ~ 14293068 (+)
tac1 tac1 other downstream 561227 14466265 ~ 14468882 (+)
G197665 NA other downstream 889382 14794420 ~ 14796728 (+)
LOC103030137 prrc2a,LOC101471845,LOC102784426,LOC102311189 other downstream 1856885 15761923 ~ 15789854 (+)
ppp1r11 ppp1r11,LOC107694341 other downstream 2416904 16321942 ~ 16330240 (+)

Expression


Co-expression Network