LOC111195557


Basic Information

Item Value
gene id LOC111195557
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 13987037 ~ 13988938 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022683434.1
ctacagCTGCTGCGTTTGGTAGGAGAGTTTTTGTGTCGCCGCTGTCGACTCATCAAGGCTCTTTCTCCAAATGTTCCATCGTTCTGGGTACACAAAGTGGACATGGCGCTGACCGTGGCCAGAGCTCAGTGGGAGTCCTTCATCTGCTCGGGCACCGTGGTCTTTCTTTACATGTTGTGCCGTGACACTGTCTCAGCGGAGGTGGCCAGCGTGGAGGAACTGCATGCGGTTTTTCTCACCTGCCTGTATGTATCATATGCATACATTGGCCCTGAGGTAGGCTATCCAGCAAGGCATTTCATCAGGGAGGACAACAGGCAGGCATTTTGGAAGCGCGCCTTAAACATCGCCACGCGCATGAGCCAGAAGATGCTGCAGATCAACATCTCGCCATCTGTCTTCGCCCAGGTCATTTCTGACCTGAAGAACAGGACGGACCATTGAAGGATtggaattaaaaagaaaaaaaaaactagcaattttaacttttaatatttatattttactatcaAGTCACGTATTAGAAAACATTCTATTATATTACTACTAGGAATAAAGACAGCAAGTGTAACATAGTATTAGGCAaggaaactaaacaaataaaaactaaaataagaaataacaaAACGAGTAGATTACACTatcaaatacaaacaaaatagaAATACCAACCAATAATTATTAGGAGAAGATCCAAATTAAATCACATTAGCAGGACACCTGGACAGAACCGGACCTAGCTTGGGAAACTAGAAAGAAATTGACAAACTGGACAGATGTCAGGGCAGGAAACTTCCAAACACATCCAGTTGTCCAGTGAAGTGTCGTTAGGGACAGTTCATAAAGCTGCAGTGTCTGGCTTCATGTGTTTTGGAGGCAGCACATGATGGCATTCACTGCTCCAGCTTGGGGGCAGCATATGTGGTGGGAGaggaactgctgctgcaggaaATTGAGATTTGTgaaggacagacagatagaataGGAAAAAGACTGATTGACACAGGGAGGCTCCAAGATCAGAACAGGGACGCTAACATAGATAGAAACATGGACAGTGATGAAACAGACTGGATACTAGAAGTGGACATCAAATGAGGAcaagacacacagacaggatAAACAATggctatatatgtttttattatatatttatttgtgctGTCCCGTGTCGACCAGAGGAGGACTGGTTccccttttgagtcttggttcctctcaaggtttcttcctcctgaTCTGAGGGAGTTTTCCTTGCTACTGTCGCAACTGGCTTGCTCAAAAGGGGCTCAGACACGGAAATAgctatttaggtttatttaaatagaaattaatATTAGTCCTGATCAGTATGAAAATGTCGGGACAATAAAAACTTTCAGTAATCAATAACATTTGCTAGTATAATTTTGGATTTATgttagattttaattttatatttcaacACTGAAATGCAGAGCACCTTTATGACCAATATGGTTGCCAGTTTTGTCACTTTTATGAACTCTAATAAATaatcttaaataatattatttcattttcaaatgttCATGAAtctttatataaattaataataattgttatatcaaaataaaattttagcAAACAGTGAAATTGTGAACTTTATTTGCAGGACACTTGTCAGGACCGGATCAGGCTATATAGTCTAGATGGAAACAGGGGTCCACGAGCACATAGTAGATTTTTTTTCGCcacctgttttttcttaatctttgaagtgtctattttaaggttctgacaggtaacaggatggAATattgtcccatgacatttatttttaaccctttaatgcatcTATGCTAATTCCGAAccggaaaaaaaatatgaagaaaatggcatagctccttgagttaacaacctatacagacaaatgagcacactttt

Function

GO:

id name namespace
GO:0043085 positive regulation of catalytic activity biological_process
GO:0045859 regulation of protein kinase activity biological_process
GO:0042327 positive regulation of phosphorylation biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022683434.1 True 1902 mRNA 0.39 1 13987037 13988938

Neighbor

gene id symbol gene type direction distance location
LOC103030231 NA coding upstream 81999 13902767 ~ 13905038 (+)
LOC103039331 si:dkeyp-92c9.3,LOC108273295,LOC107672858,LOC107702514,LOC106570358,LOC107738593,LOC108411155,LOC107731552,LOC107571466 coding upstream 192925 13670343 ~ 13794112 (+)
LOC103043039 NA coding upstream 320709 13659887 ~ 13666328 (+)
LOC103042421 NA coding upstream 518934 13463299 ~ 13468103 (+)
LOC103036495 NA coding upstream 523801 13454703 ~ 13463236 (+)
col28a1 NA coding downstream 312972 14301910 ~ 14339402 (+)
sdhaf3 sdhaf3 coding downstream 361119 14350057 ~ 14364677 (+)
jarid2 jarid2 coding downstream 1088606 15077544 ~ 15259664 (+)
mylip mylip,mylipa,LOC107754815,LOC107731572,LOC107694366 coding downstream 1411985 15400923 ~ 15434466 (+)
LOC103027820 npr1,npr1a,LOC108435512,LOC107694365,LOC107677481,LOC107754786,LOC106588322 coding downstream 1476554 15465492 ~ 15582858 (+)
G197496 NA non-coding upstream 14294 13946514 ~ 13972743 (+)
LOC111195567 NA non-coding upstream 69950 13914084 ~ 13917087 (+)
G197487 NA non-coding upstream 86618 13898963 ~ 13900419 (+)
G197480 NA non-coding upstream 110385 13869546 ~ 13876652 (+)
G197459 NA non-coding upstream 269035 13717286 ~ 13718002 (+)
G197547 NA non-coding downstream 80866 14069804 ~ 14074420 (+)
G197550 NA non-coding downstream 138493 14127431 ~ 14139128 (+)
G197555 NA non-coding downstream 186401 14175339 ~ 14175670 (+)
G197557 NA non-coding downstream 204236 14193174 ~ 14197065 (+)
G197609 NA non-coding downstream 387540 14376478 ~ 14376705 (+)
G197334 LOC108441809 other upstream 624379 13324386 ~ 13362658 (+)
s100a14 s100a14,LOC108442988 other upstream 1022688 12956670 ~ 12964349 (+)
LOC103029421 NA other upstream 1058510 12889358 ~ 12928527 (+)
G197106 NA other upstream 1212541 12715368 ~ 12774496 (+)
grhl2 grhl2,LOC107748368,LOC107550099,LOC107738316,LOC107698657,LOC107672862,LOC107552317 other upstream 2240802 11687399 ~ 11746235 (+)
rpa3 NA other downstream 287853 14276791 ~ 14293068 (+)
tac1 tac1 other downstream 477327 14466265 ~ 14468882 (+)
G197665 NA other downstream 805482 14794420 ~ 14796728 (+)
LOC103030137 prrc2a,LOC101471845,LOC102784426,LOC102311189 other downstream 1772985 15761923 ~ 15789854 (+)
ppp1r11 ppp1r11,LOC107694341 other downstream 2333004 16321942 ~ 16330240 (+)

Expression


Co-expression Network