mtdh


Basic Information

Item Value
gene id mtdh
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 22160809 ~ 22169858 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022683442.1
CAAGCGTGCGCGTTCCCGTGCTGTAAGATGGCAGCAACCTGGCGAGCCGCAGCGCTGGAGCAGGCCGAGCTCGTGTCGGATCGTCTCCGGCGGCTCGCGTCCTCAGGACTGCATTTCCTCCACAATGAGTTCGGACTGGACCTGGGCGTGAGCCCGGAGCTCTGGCCGTCCTGGGCGATCCTGACGGCGGTGCTGGTGGGGCTGCTGGTGGCGGTGTGGTGGGTCGTGGCCTGCGGCGGAGCCACAAGGAGAAAACGGCGAACCGGTGCGAGAGAAAATCACGTCAACGTCAGCGGTGCCGTTAGCGCGACTGACGGCGGGAAGACCCAGCCGGCGAAGAGTGCGAGAACCGAGGAACcgaagaaaaagaacaagaagaaggCAAGCGAGAAGCAGAAGACCCAACCAAATGGCCGGACGGTTACTGAGCCTCGAGAAGAAATCAAAGCTGTTCAGGAGAGCCCTAAACAGGCAACACCTCCACCACAGAAACAAtcacaaaaacagcagcagcaaccaccgcagaagcagcagcaaccaccgcagaagcagcagcaaccaccgcagaagcagaacaacagcagcagcaagcaACCACCGcagaaacaacagcagcagcagcctgcacAAAAGCAGCAGCTGCCACCACcgcaaaaacagcagcagcagcctccgcAAAAGCAGCAGCAACCActgcaaaaacagcagcagcagcagcctccgcaaaagcagcagcagcagcagcaaccaCCGCAAAAACCGCAGCAGCAACCAccgcagcagaaacagcagcagcagccttcACCACCTGCTGATGATAAGgccaagaaaaataagaagaagcCAAAACCAGAGGGCAAGCAAGGCCAAAATGCATCAGACGGAAAGGAACCTGATGAAGGTGCTTGGGAAACCATGGTCAGTAACCGCGAGAAGCGTCAGCAGCGCAAGAAAGAAAAGGGTCCTGGTGAACCCGGCAGCCCTGTGGCTGGCCAGCATGGTGGCAAGCAGACAGCACAACCTGTGGTTATCGCTCCAGTCATCACTAAGAagaacaaagAATCATTGAATTTGAAGTCTGAGAAGAAGGAGGCCGTCATTACTCCAgCACCAGCCAACTGGAATACTATGAGCTCTGTGAACAGTGGAGGATGGAATGAAATGTTGAAGATCACACCTCAGGCAAACACCTCAGACAATGAGAAGTGGTCTGTCAACATGAAGAAATCTGGACAGAGAAACTCTGAGCCCTTGACCCGAGCACAAGAATCAGATGGGACGTGGACTGCCATGACCGGAAGAATTAAGCCTGAGCGGAACACTGTGAACTTCGCCATGCTTGGATTAAACCCATCAGCTGGAGATCCTTCTGCTGATTTGGGGAACTGGACTCATGTTGACAGCGAGTGGTCTGGAATTAATGGTCTTGGAAGTGGGGATTTGGGTTCCGACTGGAATGCTCCGGCCGAGGTGTGGGGGAACTTTGAAGAACCCAAAGTGGAGACACCAGCTGTCCGAGAGACACCTGTTTCCAAGCCACCAGCGAATGTGTCTCAGTTGCAAGATTCAGGTGATGATGATAAAGAGAAGGGAGATCCATCTGGAAGTGGCAAGTccaagagaaagaagaaaaagaagaagaaaccaGAGGATGAAAATGCTGCTTCACAGGTGAACTCAGAAGTATTACCTGCTCCTGCAGAGAGCAGCACCAATAAGCCCCGTCCTCATGTGCCACAGGAGGAACCAGCCAAGCAGAATGTTATTTCATCTGCCAGTCAGAAGAAAAATGACCAGAATTGGGAACCCCCGAAGCAAGTTCAGAAGAAAAAGGccagaagagaaacatgagcaACCGTGATATGCAACTAATTGACAATGTTTATGCAATAATCTCAGAGTACAGACTTTTATACAGAAAACTTACTGTACAAGTCAAAATTCCAAAAAGCATCAACACTGAGTTGGAGCAACTCAGCTAAAACATTaaatcagtataaaaaaaatcgaGCTGCAGCAGAAGAGAATGATCCACGGATCAGAAAACGACATATGTGCACTATGTTACACTGAAGAAAAGGAATGGTCATCATCCTTGGCATCGCACACAgtgcatatatatttaattaatattttccaaCTGATACTTTTGCAAGCGCTTATTCGGCTAGATCTGAGCTGTTTAATATCGTTTGGGAAATTGCTAAATTTTGAggatgtttacttttttttatgctttccATTGATTACAGCTGCCTGTGGCACTTTTATACTGCTGAATTGATTTCAGCTGTATTGCAGTGTAGCAGTTAGTGTTAGAGGCCACAGAGAGGCACTGCGAGTCAGTACGAGTTGTAATGAAGTACTTGAAAGTCATCAGTAGGGGCAGTGAGAGATtggtatattactgtatttttgccaTCTGGTGATTTGGCTTGGAACAAAATGAGAGTATAAATTACTACAGAGACTTTTCTAACACTAGGCATCTCCTCAGtgctttttttccctcctctgTCCTCTTGAGCATATTTTCTCATGGATCTTTACAGACCTTTTGAGATGTTTGCATTCTTTTACTTTGTCAACGGTCAGATGAATTCAGTGCTTATTTTTCTCTTGCAACCTCTGTTGTAGAAAAAGCCACGCCATATGTACAGAATTAATAAGggcttttttttctataattctGTTTAATTGCACTGTGCTGAAGGTTGTAAAAGTCTctattttccttattttctgATCTTGTTGAAATGTGAACGTTTAATTCCGGTTTCATTTTTTGATATCTTGTAATGAGTAGTTCAAAACGATTTTAATCGAGAGAATGAGAGATCCGAGATGGTAAGAGCAGCTTTACTTCCATGCTACTAAAATAGTATCAGTATCAGGAATTTGTTGCCTTAATCTGTTCTTTGTAGTGTATGCATCTATCTCTATTTCAAGTCTTCTGAACAAGAGGTGTGGAATTATCATTGTTTAATTTCGAGTTTGATTGATGTCAGAGCTGCACTTACTGTTGCACGAATCTTATAATCGTACATTGTAATCAAATATGTCCAGTTTCTTTGTCTACTCATACAGGTAAtactctctttaaaaaaaaaaggctttaatgAAAGATCATGAAGTGGATATCGCTGTTGGCAAGACTGCAGCTTTTGCTAGATCAAAAAAAttgttctctctttccctcctttttttttttttttttttttcttaaaggctTTAAGCCTTGAATTAAATGCGTCCATATGTGGATTGACTGGGTGTTCATCCCATGGTCCTTTTTGTAAACTATGGTAGATCCTGCGTATCTGGTACTCTGGTTTAGAATCAGAACACCTGCCTTAGTTTTTCATTAGAGGGGTGACTAAACCGATGTATTTATATCTGTCTCCGGTTTATGGATGATTACTGAAGTCAATGCAATATTTCTATGTtgatttgttaaataataaatgaaacatttgatcATTG

Function

GO:

id name namespace
GO:0050879 multicellular organismal movement biological_process
GO:0050881 musculoskeletal movement biological_process
GO:0003009 skeletal muscle contraction biological_process
GO:0003010 voluntary skeletal muscle contraction biological_process
GO:0031444 slow-twitch skeletal muscle fiber contraction biological_process
GO:0014721 twitch skeletal muscle contraction biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022683442.1 True 3483 mRNA 0.45 13 22160809 22169858

Neighbor

gene id symbol gene type direction distance location
LOC103028967 rrm2b,LOC108425040,LOC107702093,LOC107556385,LOC107724293,LOC107565196,LOC108256937 coding upstream 1385 22150369 ~ 22159424 (+)
azin1b azin1b,LOC108425019,LOC108256938 coding upstream 12447 22141456 ~ 22148362 (+)
LOC103030765 klhl38a,LOC103030765,LOC108424967,LOC107724354,LOC107565193,LOC107702087,LOC108272409,LOC105907674 coding upstream 118262 22035185 ~ 22042547 (+)
LOC103033932 LOC108424940 coding upstream 216555 21931796 ~ 21944254 (+)
fam92a fam92a1,LOC107710198,LOC107653841,LOC107556364,LOC107702073 coding upstream 288357 21860578 ~ 21872452 (+)
LOC103028646 laptm4b,LOC103028646,LOC107724295,LOC107702097,LOC107565197 coding downstream 7022 22176880 ~ 22191152 (+)
LOC103028033 NA coding downstream 31694 22201552 ~ 22209038 (+)
LOC103026526 nt5c1aa,5nt1a,LOC108425118,LOC107653825,LOC107702103,LOC107710055,LOC107724290 coding downstream 57264 22227122 ~ 22252040 (+)
LOC103025175 hpca,LOC108425130,LOC105005722 coding downstream 142397 22312255 ~ 22372349 (+)
LOC103026000 zgc:91944,LOC103026000,LOC108425172,LOC107710043,LOC108257190,LOC107556377,LOC107724285,LOC107702106,LOC107696225 coding downstream 224751 22394609 ~ 22407693 (+)
G199006 NA non-coding upstream 169182 21991532 ~ 21991627 (+)
G198968 NA non-coding upstream 318981 21820975 ~ 21841828 (+)
G198965 NA non-coding upstream 355070 21805474 ~ 21805739 (+)
G198947 NA non-coding upstream 504045 21656416 ~ 21656764 (+)
G198943 NA non-coding upstream 540964 21619638 ~ 21619845 (+)
G199056 rpl30,LOC105895124,LOC106589133,LOC106572903,LOC107568279,LOC107702100 non-coding downstream 26808 22196666 ~ 22200711 (+)
G199090 NA non-coding downstream 46021 22215879 ~ 22218387 (+)
G199097 NA non-coding downstream 91256 22261114 ~ 22261775 (+)
G199103 NA non-coding downstream 130036 22299894 ~ 22300471 (+)
G199137 LOC103026708,LOC108424525,LOC108257191 non-coding downstream 221508 22391366 ~ 22392565 (+)
LOC103037930 NA other upstream 777809 21358464 ~ 21383000 (+)
G198815 NA other upstream 1357919 20802371 ~ 20802890 (+)
mrpl36 mrpl36 other upstream 1885955 20273021 ~ 20274854 (+)
fndc5 fndc5b,LOC108433842,LOC108272379,LOC107691512,LOC107584283,LOC107687074 other upstream 2071822 20053028 ~ 20088987 (+)
G198540 NA other upstream 2913413 19246972 ~ 19247396 (+)
G199091 stk3,LOC105907728,LOC107724280,LOC107702102 other downstream 49407 22219265 ~ 22223036 (+)
znf704 znf704,LOC107702114,LOC107555575,LOC107696217 other downstream 660373 22830231 ~ 22869257 (+)
ndufs5 ndufs5 other downstream 3448070 25617928 ~ 25620135 (+)
c23h18orf21 LOC103027551 other downstream 4416381 26586239 ~ 26613188 (+)
cdk6 cdk6,LOC107667775,LOC107567973,LOC107722162,LOC107558583,LOC106588946 other downstream 4662096 26831954 ~ 26892623 (+)

Expression


Co-expression Network