LOC111195489


Basic Information

Item Value
gene id LOC111195489
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 25111809 ~ 25112275 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002651661.1
AAGAAGTGGCTCAGAATGGAAGTGGGACATCTTCAGCGACAAGTCCTGCTTTGGTGGTCTTATCTAGCTCTCCAAAAGATTTGTGTGGAGGAATCGAAGTAAGCATCAAGATGAAAGGAACTTTGACAGGCCAGTCGTGTTACAATAacgaggtcctgcaaccagtggttATACCTTTTCTGCATGCACACTCGAGTGCActgtttcaacaggacaatgcctATCctcgctgctgctgctttctcaagagcttgccttgatgACAGAGATGCTATGTAATGTCCAGGTGCATCGCCAGACTTGAATTGAttgaaactgattaaaaatgtgtggtaTGCTTTTGGACATTTTATTATCCCTGGCATCAGCACaaacttc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002651661.1 True 378 lncRNA 0.44 2 25111809 25112275

Neighbor

gene id symbol gene type direction distance location
csmd2 csmd2,LOC107698986 coding upstream 36018 24648033 ~ 25075791 (+)
LOC103034043 NA coding upstream 860420 24241364 ~ 24251389 (+)
ilf2 ilf2,LOC105924049,LOC106569884 coding upstream 1162816 23942554 ~ 23948993 (+)
hpcal4 hpcal4,LOC107691524,LOC103358777,LOC107396335,LOC107562761 coding upstream 1179769 23898683 ~ 23932040 (+)
trit1 trit1 coding upstream 1356252 23688512 ~ 23755557 (+)
trappc3 trappc3 coding downstream 258226 25370501 ~ 25377202 (+)
col8a2 col8a2,LOC107564494,LOC107724334,LOC107565043,LOC107710560 coding downstream 304293 25416568 ~ 25526086 (+)
LOC103042327 ptp4a2,LOC103042327,LOC108257240,LOC105012508,LOC107564493,LOC107670276 coding downstream 417129 25529404 ~ 25560124 (+)
anln NA coding downstream 455397 25567672 ~ 25579392 (+)
ak2 ak2,LOC107556372,LOC107710539,LOC107653866,LOC107670285 coding downstream 468713 25580988 ~ 25587640 (+)
G199588 NA non-coding upstream 673770 24437805 ~ 24438039 (+)
G199546 NA non-coding upstream 891195 24220361 ~ 24220614 (+)
G199469 NA non-coding upstream 937883 24121268 ~ 24173926 (+)
G199424 NA non-coding upstream 1325850 23782931 ~ 23785959 (+)
G199436 NA non-coding upstream 1341345 23769396 ~ 23770464 (+)
LOC103041709 NA non-coding downstream 184767 25297042 ~ 25300856 (+)
G199669 NA non-coding downstream 196367 25308642 ~ 25308947 (+)
G199683 NA non-coding downstream 265122 25377397 ~ 25378146 (+)
G199684 NA non-coding downstream 266304 25378579 ~ 25378825 (+)
G199691 NA non-coding downstream 404622 25516897 ~ 25548341 (+)
znf704 znf704,LOC107702114,LOC107555575,LOC107696217 other upstream 2242552 22830231 ~ 22869257 (+)
G199091 stk3,LOC105907728,LOC107724280,LOC107702102 other upstream 2888773 22219265 ~ 22223036 (+)
LOC103037930 NA other upstream 3728809 21358464 ~ 21383000 (+)
G198815 NA other upstream 4308919 20802371 ~ 20802890 (+)
mrpl36 mrpl36 other upstream 4836955 20273021 ~ 20274854 (+)
ndufs5 ndufs5 other downstream 505653 25617928 ~ 25620135 (+)
c23h18orf21 LOC103027551 other downstream 1473964 26586239 ~ 26613188 (+)
cdk6 cdk6,LOC107667775,LOC107567973,LOC107722162,LOC107558583,LOC106588946 other downstream 1719679 26831954 ~ 26892623 (+)
G200104 NA other downstream 2171945 27284220 ~ 27284567 (+)
LOC103023645 gngt1,LOC103023645,LOC108257427,LOC103152523,LOC103362787,LOC107085869 other downstream 2192246 27304521 ~ 27305586 (+)

Expression


Co-expression Network