LOC111195506


Basic Information

Item Value
gene id LOC111195506
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 10632355 ~ 10637265 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002651681.1
ttttttaatgttttgaataTAACCAGCAGATGGCGCAGTTATGCACTTTTACTACCCATCCCCCTTTACACTGAACTCACTGAAGAAGAGTGAAGGAAGCTGAGCAGCTAAATAATAAGAGCAACTAAAAGTGATTGTGTTTAATTTACAGAAACATAAACAGGaggatattattattaaaatgacgATGAAATGTTAAAAGCAGGTCCTGGAACGaccatgtctgtgtttttctcagatgtcctctgaaaaaataacaggctgaattacctactgtttttaaCGGAAACAGTAAAATTTCAGAAAATGTAATCTCGTCCAGAAACACATCTCTCAGcggcgagtggaaatggaggagctactgaacgcgatgacTTGTGAccgagaaagaagtgataaaccaacataCTTCACTGCAAGTTCTACATGTTATCCACCATTTTATTCTAATGGGAAGCTTCTTTACACAGCCATCCCTCAGCCGTACACTAACACTGGACCATATAAACACTGTCAGAAAGCGGAATGGGGAAATATCCACCCACAGAATGACAAACAAACTCGgaagaaggtaaaaaaaaaaaa
>XR_002651682.1
ttaatgttttgaataTAACCAGCAGATGGCGCAGTTATGCACTTTTACTACCCATCCCCCTTTACACTGAACTCACTGAAGAAGAGTGAAGGAAGCTGAGCAGCTAAATAATAAGAGCAACTAAAAGTGATTGTGTTTAATTTACAGAAACATAAACAGGaggatattattattaaaatgacgATGAAATGTTAAAAGatgtcctctgaaaaaataacaggctgaattacctactgtttttaaCGGAAACAGTAAAATTTCAGAAAATGTAATCTCGTCCAGAAACACATCTCTCAGcggcgagtggaaatggaggagctactgaacgcgatgacTTGTGAccgagaaagaagtgataaaccaacataCTTCACTGCAAGTTCTACATGTTATCCACCATTTTATTCTAATGGGAAGCTTCTTTACACAGCCATCCCTCAGCCGTACACTAACACTGGACCATATAAACACTGTCAGAAAGCGGAATGGGGAAATATCCACCCACAGAATGACAAACAAACTCGgaagaaggtaaaaaaaaaaaa

Function

GO: NA

KEGG:

id description
ko04111 Cell cycle - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002651681.1 True 585 lncRNA 0.38 4 10632355 10637265
XR_002651682.1 False 545 lncRNA 0.38 4 10632359 10637265

Neighbor

gene id symbol gene type direction distance location
LOC103040599 LOC108412773,LOC107563026,LOC107666327,LOC107753959,LOC108257022,LOC107665149,LOC107727719,LOC107549872 coding upstream 5938 10610474 ~ 10626417 (+)
LOC103042831 LOC108438410,LOC108257051 coding upstream 34192 10593735 ~ 10598163 (+)
LOC103043362 LOC108438408,LOC108256995,LOC108256994,LOC108438412,LOC107666325,LOC107563034 coding upstream 59199 10570303 ~ 10573156 (+)
LOC107197051 LOC108438408,LOC108256995,LOC108256994,LOC108438412,LOC107666325,LOC107563034 coding upstream 69103 10545576 ~ 10563252 (+)
LOC107197050 LOC108438408,LOC108256995,LOC108256994,LOC108438412,LOC107666325,LOC108438409 coding upstream 93006 10536480 ~ 10539349 (+)
LOC103040077 NA coding downstream 103622 10740887 ~ 10771033 (+)
LOC103032369 si:dkeyp-113d7.1,LOC103032369,LOC107727714,LOC107549870,LOC107563030,LOC105913040 coding downstream 158857 10796122 ~ 10803111 (+)
LOC103032890 mbtd1,LOC106607505,LOC106600809 coding downstream 181772 10819037 ~ 10838287 (+)
utp18 utp18 coding downstream 227473 10864738 ~ 10878687 (+)
LOC103035340 LOC108438873 coding downstream 244510 10881775 ~ 10902503 (+)
G196649 NA non-coding upstream 4304 10627367 ~ 10628051 (+)
G196619 eif1b,LOC103043673,LOC107549864,LOC107666344,LOC107665169 non-coding upstream 147590 10481407 ~ 10484765 (+)
G196618 NA non-coding upstream 162207 10469798 ~ 10470148 (+)
G196573 jupb,LOC108438403,LOC107562513,LOC107666348,LOC107665165,LOC107549862 non-coding upstream 368976 10263037 ~ 10263379 (+)
G196572 NA non-coding upstream 370512 10261574 ~ 10261843 (+)
G196686 NA non-coding downstream 141885 10779150 ~ 10781295 (+)
G196687 NA non-coding downstream 147895 10785160 ~ 10811742 (+)
G196697 NA non-coding downstream 201649 10838914 ~ 10856867 (+)
G196684 NA non-coding downstream 208793 10846058 ~ 10863254 (+)
G196702 NA non-coding downstream 266791 10904056 ~ 10906225 (+)
G196633 NA other upstream 140254 10491546 ~ 10492101 (+)
dpm3 dpm3,LOC107678800,LOC107693280,LOC107750811 other upstream 571256 10058139 ~ 10061099 (+)
LOC103026923 si:ch211-39a7.1,LOC108437914,LOC107599586,LOC107678794,LOC107750809,LOC107693335,LOC107739611,LOC108273254,LOC107589479 other upstream 744138 9774379 ~ 9888217 (+)
G196419 NA other upstream 891587 9740359 ~ 9740768 (+)
G196415 NA other upstream 911085 9720783 ~ 9721270 (+)
samd14 samd14 other downstream 373776 11011041 ~ 11031269 (+)
mrpl24 mrpl24,LOC107559719,LOC107669969,LOC107693309,LOC107580210 other downstream 764890 11402155 ~ 11417703 (+)
polr2k NA other downstream 914395 11551660 ~ 11554583 (+)
grhl2 grhl2,LOC107748368,LOC107550099,LOC107738316,LOC107698657,LOC107672862,LOC107552317 other downstream 1050134 11687399 ~ 11746235 (+)
G197106 NA other downstream 2078103 12715368 ~ 12774496 (+)

Expression


Co-expression Network