LOC111195524


Basic Information

Item Value
gene id LOC111195524
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 18610759 ~ 18622911 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002651700.1
AGCAGGGTTTGAATGTTTGGCTTGGAGAGGCTGGTTAACATAATTAAACTCCAGTGGTTTCCAGTAGTTCGTCCGCTGTGCTCTCAGACTCGAGGCTTTAACTTCTGAATACAAGTTGTAGCTCACGTTTAAGGAGGCCAGCATTTTTCTCACTCACAGCAAAGCTGAAACTTCTAATTACCAGCCTTTCATATTTCTTCCTTTTCAGTTAGACCAGGCCACATATAATCATCAAATTAGCAGAGACTGAAATTCGATAAGGCTAAGTAAGTCATGGAGAAGATGAACACCAGCAGCACAAACGCTCCTGCTGCTACACCGTACACCCAGGTCTTCAGCTTACCAT
>XR_002651701.1
atttccGCGGCCCTGCAGATGGATACTATTGGGACAAGTTGTAGCTCACGTTTAAGGAGGCCAGCATTTTTCTCACTCACAGCAAAGCTGAAACTTCTAATTACCAGCCTTTCATATTTCTTCCTTTTCAGTTAGACCAGGCCACATATAATCATCAAATTAGCAGAGACTGAAATTCGATAAGGCTAAGTAAGTCATGGAGAAGATGAACACCAGCAGCACAAACGCTCCTGCTGCTACACCGTACACCCAGGTCTTCAGCTTACCAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002651700.1 True 346 lncRNA 0.44 4 18610798 18622911
XR_002651701.1 False 269 lncRNA 0.44 4 18610759 18622911

Neighbor

gene id symbol gene type direction distance location
smap2 smap2 coding upstream 483238 18103816 ~ 18127521 (+)
col16a1 col16a1 coding upstream 547892 17934693 ~ 18062867 (+)
adgrb2 adgrb2,LOC107722142 coding upstream 780882 17294891 ~ 17829877 (+)
med10 med10,LOC107595625,LOC107691542,LOC106588698 coding upstream 1909512 16695596 ~ 16701247 (+)
nsun2 nsun2,LOC107694333,LOC107691499,LOC107711338 coding upstream 1977307 16599287 ~ 16633452 (+)
LOC103029482 LOC103029482 coding downstream 227616 18850527 ~ 18851285 (+)
pip4p2 tmem55a,LOC107724355,LOC107696196,LOC107702130 coding downstream 283675 18906586 ~ 18924321 (+)
tmem64 tmem64,LOC107696193,LOC107584320 coding downstream 376463 18999374 ~ 19011467 (+)
bag6 bag6,bag6l coding downstream 425029 19047940 ~ 19067708 (+)
abcf1 abcf1,LOC107745711 coding downstream 456174 19079085 ~ 19100818 (+)
G198374 NA non-coding upstream 674 18609564 ~ 18610085 (+)
G198368 NA non-coding upstream 10134 18600405 ~ 18600625 (+)
G198362 NA non-coding upstream 32469 18575228 ~ 18578290 (+)
G198356 LOC108410782,LOC107698976,LOC107670023,LOC107555956,LOC107722163 non-coding upstream 74088 18493617 ~ 18536671 (+)
G198349 NA non-coding upstream 189276 18415800 ~ 18421483 (+)
G198378 thsd7a,LOC108410784,LOC104968073,LOC103477695 non-coding downstream 29069 18651980 ~ 18652794 (+)
G198468 NA non-coding downstream 449889 19072800 ~ 19073616 (+)
G198537 NA non-coding downstream 589084 19211995 ~ 19212328 (+)
G198584 NA non-coding downstream 848448 19471359 ~ 19471750 (+)
G198588 NA non-coding downstream 864029 19486940 ~ 19490316 (+)
G198344 NA other upstream 225687 18384627 ~ 18385072 (+)
LOC111195522 LOC107679107,LOC107679108 other upstream 2180225 16424617 ~ 16430534 (+)
c23h5orf49 cunh5orf49,LOC103039620 other upstream 2217261 16388808 ~ 16393498 (+)
atat1 atat1 other upstream 2251091 16345117 ~ 16359668 (+)
ppp1r11 ppp1r11,LOC107694341 other upstream 2280519 16321942 ~ 16330240 (+)
G198397 NA other downstream 235621 18858532 ~ 18863366 (+)
G198400 NA other downstream 264558 18887469 ~ 18891614 (+)
ppp1r10 ppp1r10,LOC107745712,LOC107687078,LOC107691520,LOC107709274 other downstream 481496 19104407 ~ 19116302 (+)
LOC103045134 khdrbs1,LOC103045134,LOC107691518,LOC101482948,LOC102791371,LOC107709277,LOC107584277 other downstream 543435 19166346 ~ 19182478 (+)
G198535 NA other downstream 582166 19205077 ~ 19205658 (+)

Expression


Co-expression Network