LOC111195537


Basic Information

Item Value
gene id LOC111195537
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 29674786 ~ 29744233 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002651719.1
CGGTCTGATACTGTGAACCCAAAGCAGTGTCTCTCCTCAGTCATCGTCTGTTTTATACACAGTGGTTAAATTGACATTACTGCGGTAAAACAGTGTCTTATTCAGCGGTAAACGGTTTTAACAGACCCGCGGAGACGAGTTATCTGCAGTTTTTCGGATCATTGTCGCCCAAAAGCACAGTTGTACCTACTGTCTTCTGTTGCCCAAAACATCTGAGAAACCAGTAGAAGGTGTAGGACTTGACTGAAGAAGATCCTTGGAGAGTGGTGGCAGAGGATGCTTTCACATCATACATGAGCAGCAACAACCTCGCTTCCTGGCTCTTGTAGACGCCTGTGATGATGAGCAGAGCACAGTCAGCCATCTCAACTCCATCAGTGAAACACAGCAGCAGCCCACATCACCCATCACCATGGCCCCAGAAGCTGGTTGAGAGGGCTCGGATCATGGCAGACGTTGATGCGTCCTGGCAGGGCTGCATTGAGGAGGAGCACCTTTACCTGTCACTGGAGCGGCAGATCAAGCACCAGCCAatgctcactcactcattctaGGAGCTCCAGTGCTACTCCACTTTGATCAAAAGTAGCCCAGATTGTGCTTTGGCTCAGCGGTCGGGACTCACTCTTTCATCTAACACTTTGATTCAACTCTTACTGATGAGTATACAAGTGGTGCGGAATCCTTTTTACGATTAAGGAAAACTTCTTGAGCAAAATGCTCCATACTCCATAATGTATAGTCTCATTACCGCACATATTACAAGTTTCAGTTGCTGGGTATTTGACTCTTAATTATTACACTATTCTGTTATATTACGTGTTTTAAAAAGACACTTTAGAACCACTGCACAACAGTATAACAATTTCAATATCAACAGGTAACCCATACTAGTACATAGGACTGCAGCAACACACACCTGGAATGGTGAGAAGCCATCTCGGTGCCCAGTTTGGTGTTGTGCTCAACCTTAGTCATAAATGTGGTGGGAGTTTGCTCAGGGTTCCAGCAGTGGCAGCCAAAAATATGAAGACTTTAGGTAAAACATGctacataaacaaaatattttggaTATACCAGTTCTTACTCGGCCCACCGGACTGTCTTCCAGTACTGTTGAGTGGGGTGGGGGGTGATTTAGAGCTAGTACTGGCTTCGTAAGTAGCCAAGTGTACTGTGTAAACAACATTAGAGGATGTAATTACCgaaataattgtgattattCCGAAAGACAAAGAATGGCATGATTATGCATAAATATACAAAAGAGCATTTAATCACAGCTATACAATTAAAATGCTGCAAACTCTGTTTCTCCCTATAGCTATCCCATTGCTCAATCTCCTAATTTTGCAAAACAATGACAGTACACTGGGGTGATGACATATGAAGCAAAATGTAATTAGCTTTTGAAATGCTTGGGCTGAATGGCAATCTGTCTTGTGAAATTGGGAGGCAGCTGTTTCCTCGTGCCAGCCCAGTCTCTCCAAGCTGTTTTAATGCCGTTGATTTTGGAGCTTGCACTGATAGGCAGACATGCTCTGAACGAGGGCTTCAAACCATGGCACCGCCCAGCTATACGCCACCATTTGACCACCTCCCCAAATCGTCTggcctctctcacattctcttgTAGGTATAGGAAAAcagtctttctttcttaatCAAGGGCACATATAGGCCCCTTAAAATCAGCAAATGTTTAAAACACCATAACCCATCTCCGCAACCATTACTGTAAAAAGTGCACAGCCTTAACCAACTttacacactgcagaaagtgTGTCATGCAAATGAAGTTTACTTCTGGTCCAATTTCATGGCACCCCATCATAAGCCTTAGGCACATTTGAACCCAATTTTAAGTACAAAGTGAGAACTAGATTACTCTGAAAGCCTAGATTTAAAGGGCAGATTTCTTATGTAATTGAGAATCAACACAGGCACCCACtgtgaagaaaaaacagaaaattatcCACCTCTCAATATTCCAATAATACAAATCAATCTCTTAGCGCCTCtgaatacacatatatacaggtgctggtcaacgaa
>XR_002651720.1
CGGTCTGATACTGTGAACCCAAAGCAGTGTCTCTCCTCAGTCATCGTCTGTTTTATACACAGTGGTTAAATTGACATTACTGCGGTAAAACAGTGTCTTATTCAGCGGTAAACGGTTTTAACAGACCCGCGGAGACGAGTTATCTGCAGTTTTTCGGATCATTGTCGCCCAAAAGCACAGTTGTACCTACTGTCTTCTGTTGCCCAAAACATCTGAGAAACCAGTAGAAGGTGTAGGACTTGACTGAAGAAGATCCTTGGAGAGTGGTGGCAGAGGATGCTTTCACATCATACATGAGCAGCAACAACCTCGCTTCCTGGCTCTTGTAGACGCCTGTGATGATGAGCAGAGCACAGTCAGCCATCTCAACTCCATCAGTGAAACACAGCAGCAGGTGAGATCAGCCTGGCACAGTCGAGTGGTGGAGCCCTGGAGCAGATGACCTGGCTGGCAGTGAAAGGCCACCATGCTTCCAACCTGCAGAATCAGAAACAACACCAGTATTACCTACTCTGCTAGCAGGAGAATGTTTTAGGTATGCAagactgctactactactgccataTACCTTTGTCTATCATGTTACAATGatatacagtgtcagaaaccacacagGCCAGTCAATTTGAAATTACTTATTGACTTGGGGGACGATTTAGGGATGCAGACTGCACAGTGCTAATTTTATTGAATATACAGATACATTACTTTAATCCCAATACAAATCTTCAAGTCTTTATttggagaaaaggagaaaatgtatatttagtttttctatAATTTTACCATACTATGTATATCATGTGAAATGCTGTTCATCTACATTGCTATGGAAATGTCTTCAGAACCTAAGCTATCTgttaaaagcaaacaaacatgaatgcaacacaaataaacaaacttggTTAAAAAA
>XR_002651721.1
CGGTCTGATACTGTGAACCCAAAGCAGTGTCTCTCCTCAGTCATCGTCTGTTTTATACACAGTGGTTAAATTGACATTACTGCGGTAAAACAGTGTCTTATTCAGCGGTAAACGGTTTTAACAGACCCGCGGAGACGAGTTATCTGCAGTTTTTCGGATCATTGTCGCCCAAAAGCACAGTTGTACCTACTGTCTTCTGTTGCCCAAAACATCTGAGAAACCAGTAGAAGGTGTAGGACTTGACTGAAGAAGATCCTTGGAGAGTGGTGGCAGAGGATGCTTTCACATCATACATGAGCAGCAACAACCTCGCTTCCTGGCTCTTGTAGACGCCTGTGATGATGAGCAGAGCACAGTCAGCCATCTCAACTCCATCAGTGAAACACAGCAGCAGGGTACCTGAGCAGAAGGGCATTGGTGCACTCCAGTGGCCGTTGAGCTGGCAGGTTCGAGAGGATTCGCCCTTGAGCTGCCGCC
>XR_002651722.1
CGGTCTGATACTGTGAACCCAAAGCAGTGTCTCTCCTCAGTCATCGTCTGTTTTATACACAGTGGTTAAATTGACATTACTGCGGTAAAACAGTGTCTTATTCAGCGGTAAACGGTTTTAACAGACCCGCGGAGACGAGTTATCTGCAGTTTTTCGGATCATTGTCGCCCAAAAGCACAGTTGTACCTACTGTCTTCTGTTGCCCAAAACATCTGAGAAACCAGTAGAAGGTGTAGGACTTGACTGAAGAAGATCCTTGGAGAGTGGTGGCAGAGGATGCTTTCACATCATACATGAGCAGCAACAACCTCGCTTCCTGGCTCTTGTAGACGCCTGTGATGATGAGCAGAGCACAGTCAGCCATCTCAACTCCATCAGTGAAACACAGCAGCAGgcacAGGCGTGCTAGGACCTGCGTTGCTGTGATGGTTATGGAGCTGATGTTTATGTAAGTGCTGCAGCAGTGTTGgaacagtgatttttttctgctttttatagGCGATGTGGGGAGACCCAGCAGGGGGCAGTGTTGCTACAGCTGTGGGGGGGCTTGGAACCAGCTGTGCTGCTCGGTATTTGGAATGTGGAGCACATCCGCGAGCTGACGCAGAGAGCGAGGATTCAATGCAGCCGCGCAAACGGCAGGACAGCCTGGAAAGCCTTATATAATGGTGCTGCCGCGTCTAGCTCGCTGCGCTCCAGCGAAAACATTTCCTATACTAAATCATCACCTGTGAAGATGCAGTTAGGTATTGTCATACGCGCAGGGGGCTGGGAGTGTGTAAGTGTTCACACATTTGCTAGATAGAGGGTTGGTTAAGATGCAAAGACTAAATGTGCTACGTGCACAGAAGCACACACACGGGCCTGAAACCTCACAAACATTCAAACCCTCGCACAGGACAGTGGGACCTAGTTCTCATGTTATTTTCTAGTATTATCTAGAAAGCCATTTCCTTGAAAGGGAGTGCACTCATAATCTGTAAGGGCAAATTAGACAGtatgagtatttttattttagctggTCCAGTGGCTGATAGTATGACTGGCCAGTGGGGTGTGCTGTAGCTCTGCATGAGTGTAtctgagagtgaaagagagtgtgcAGATTATGTTtggctttattttaacattaaaaactaaagCTGTGCCTGATCCTCTTCAGTGAAGTGGAAGAAGCGTGATATGTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002651719.1 True 2055 lncRNA 0.43 4 29674786 29700603
XR_002651720.1 False 913 lncRNA 0.42 4 29674786 29702995
XR_002651721.1 False 477 lncRNA 0.50 4 29674786 29744233
XR_002651722.1 False 1191 lncRNA 0.47 4 29674786 29708076

Neighbor

gene id symbol gene type direction distance location
LOC103022546 NA coding upstream 21965 29646768 ~ 29652821 (+)
LOC103021391 lrrc14b,LOC103021391 coding upstream 38737 29626287 ~ 29636049 (+)
LOC103021940 LOC108426757 coding upstream 49318 29607069 ~ 29625468 (+)
gatad1 gatad1,LOC102800149 coding upstream 70033 29601867 ~ 29604753 (+)
LOC103046858 ankib1,LOC107742824,LOC107706216,LOC107654707,LOC107696581 coding upstream 74622 29570078 ~ 29600164 (+)
LOC111195487 NA coding downstream 504354 30248587 ~ 30249855 (+)
utp23 utp23 coding downstream 1227170 30971403 ~ 30974511 (+)
aard LOC108424810 coding downstream 1234517 30978750 ~ 30985844 (+)
stmnd1 NA coding downstream 1311787 31056020 ~ 31062482 (+)
cap2 cap2,LOC107706226 coding downstream 1353666 31097899 ~ 31133970 (+)
G200803 LOC108426791,LOC101073009,LOC107696579,LOC107591646,LOC101165157 non-coding upstream 34779 29636121 ~ 29640007 (+)
G200799 NA non-coding upstream 81249 29593020 ~ 29593537 (+)
G200785 NA non-coding upstream 189100 29484940 ~ 29485686 (+)
G200780 ppt1,LOC107697049,LOC107706207,LOC107589449,LOC107591677 non-coding upstream 207259 29462161 ~ 29467527 (+)
G200628 NA non-coding upstream 655689 29018573 ~ 29019097 (+)
G200840 NA non-coding downstream 129277 29873510 ~ 29878401 (+)
G200864 NA non-coding downstream 605132 30349365 ~ 30393273 (+)
G200869 NA non-coding downstream 656013 30400246 ~ 30400752 (+)
G200971 trps1 non-coding downstream 740425 30484658 ~ 30488504 (+)
G201004 NA non-coding downstream 996445 30740678 ~ 30740930 (+)
lypla2 lypla2,lypa2 other upstream 106711 29528063 ~ 29568075 (+)
eloa tceb3 other upstream 121902 29542748 ~ 29552884 (+)
G200341 LOC108426039 other upstream 1478588 28193574 ~ 28196198 (+)
LOC103032101 NA other upstream 1686891 27978282 ~ 27987895 (+)
G200235 NA other upstream 1856136 27815336 ~ 27818650 (+)
rbm24 rbm24,rbm24a,LOC107754275,LOC107592929 other downstream 1265693 31009926 ~ 31084633 (+)
G201018 NA other downstream 1268478 31012711 ~ 31015045 (+)
G201207 NA other downstream 2197969 31942202 ~ 31987057 (+)
tpmt tpmt other downstream 2309482 32053715 ~ 32067640 (+)
LOC103043810 ago4,LOC106511154,LOC103043810 other downstream 2525065 32269298 ~ 32287803 (+)

Expression


Co-expression Network