LOC111195567


Basic Information

Item Value
gene id LOC111195567
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 13914084 ~ 13917087 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002651731.1
GGAGAACAGTGTAAAGCACTGAAGGTCAAGTATAGCAAGGTCCATGAAGTCTTCTCTACCTGCACTGAAAGTCAGAAATGTGCACGATGTGGAGAAAACTGGAAGCGCTTCGGTGTGAAGTGTTACTTCTTTTCACCTGATTTCCTGAACTGGACGAACAGTAGAGATCGCTGTGTAAAGATGGGAGGACATCTGATTATAATAACCAGCCAAGCTGAACAGACTTTTGTGTCTACGGGTCTTGGAAAACCTCACTGGATCGGGCTGAATGATTTGGAGACTGAAGGAAAGTGGATGTGGGTAAACAACCAACCCCTGACTGATACAGGAGTAACGTAAGAAACATGTTCTCTTACACAgtttatacactgcttttagtTTACCTTTAGATGTCCTGAATTGCAACGAATtggaaaattaaacattaaaaaaacacattttctaacaGATTCTGGAGTACAATTGCAGATGGAGCAGATGAGCCTAATAACTGGAAAGAAGAAAACCCTGCAGGAGAGAACTGTGCTAGTCTGGGGGATGAAAAAGGACGTTTTAGAGTATGGTTTGATGCTTCCTGCAGTAAAACAAGGAAATATATCTGTGAAAAGTAAAATACTTATCAGATTTGAACATGGTATATCAGTTTTTCTTATCACAGATAAAAACAAATCTTAAAATCAGCTTATTTTGAGAAAAGTCTGTTTCACAGTTTGACGagattttgtttaaatgtgtaaaaacaagTTGTGTAAATGTATCAGTAAGAAATGTACTTGCTGCAGTAATTTTGGCCACTAGAGTGCAGTATGTGATTGTGAAGCAGTTTTTATCCTACTCTGTTGCAGAAACATAATTGTTCCATTaaacagcaatattattttgtaaccttaaaatgtaaagaaaataatgtttattgtcctttaaatatatgtataactgCCAACTGAACTCTGTGCACATGGAACGGTGTTTCATTGGGTGTTTTATGCCTATAAAAGccatttaagtaaaaaaaaaacttaactttaTTCTTGTGTTCAAATCTTGAGTTAATCTCATCATGTCTACATCTACACGTCACTGAACAATTCAGACTAACCTTCAATCTTTCAcaagaaaatgttattttaaagctgttaaGAAGTATAAAtgcttataataataaaacgttATTTTGAATTAGAATTTAGACTGTGTCTGAGGTCATTGGgtgttatcttttttttttttcatttttaatttaaataaaaagatcCTCTTAAATAGAATTTCTAAGGTCTTTTAGAACAAGACGTATTGGGGTTGGTTTTGATTCTAAGAGTCCAATTCTCTTTTCTAGGCTTTTGGGAGTCAAGAGTCTTCAGAGCTTTGCATTCAGGTCCCCACAAAGAcgttaaatataattaaactgAATAAGCTTCTGTCCTTGA
>XR_002651732.1
GGAGAACAGTGTAAAGCACTGAAGGTCAAGTATAGCAAGGTCCATGAAGTCTTCTCTACCTGCACTGAAAGTCAGAAATGTGCACGATGTGGAGAAAACTGGAAGCGCTTCGGTGTGAAGTGTTACTTCTTTTCACCTGATTTCCTGAACTGGACGAACAGTAGAGATCGCTGTGTAAAGATGGGAGGACATCTGATTATAATAACCAGCCAAGCTGAACAGACTTTTGTGTCTACGGGTCTTGGAAAACCTCACTGGATCGGGCTGAATGATTTGGAGACTGAAGGAAAGTGGATGTGGGTAAACAACCAACCCCTGACTGATACAGGAGTAACATTCTGGAGTACAATTGCAGATGGAGCAGATGAGCCTAATAACTGGAAAGAAGAAAACCCTGCAGGAGAGAACTGTGCTAGTCTGGGGGATGAAAAAGGACGTTTTAGAGTATGGTTTGATGCTTCCTGCAGTAAAACAAGGAAATATATCTGTGAAAAGTAAAATACTTATCAGATTTGAACATGGTATATCAGTTTTTCTTATCACAGATAAAAACAAATCTTAAAATCAGCTTATTTTGAGAAAAGTCTGTTTCACAGTTTGACGagattttgtttaaatgtgtaaaaacaagTTGTGTAAATGTATCAGTAAGAAATGTACTTGCTGCAGTAATTTTGGCCACTAGAGTGCAGTATGTGATTGTGAAGCAGTTTTTATCCTACTCTGTTGCAGAAACATAATTGTTCCATTaaacagcaatattattttgtaaccttaaaatgtaaagaaaataatgtttattgtcctttaaatatatgtataactgCCAACTGAACTCTGTGCACATGGAACGGTGTTTCATTGGGTGTTTTATGCCTATAAAAGccatttaagtaaaaaaaaaacttaactttaTTCTTGTGTTCAAATCTTGAGTTAATCTCATCATGTCTACATCTACACGTCACTGAACAATTCAGACTAACCTTCAATCTTTCAcaagaaaatgttattttaaagctgttaaGAAGTATAAAtgcttataataataaaacgttATTTTGAATTAGAATTTAGACTGTGTCTGAGGTCATTGGgtgttatcttttttttttttcatttttaatttaaataaaaagatcCTCTTAAATAGAATTTCTAAGGTCTTTTAGAACAAGACGTATTGGGGTTGGTTTTGATTCTAAGAGTCCAATTCTCTTTTCTAGGCTTTTGGGAGTCAAGAGTCTTCAGAGCTTTGCATTCAGGTCCCCACAAAGAcgttaaatataattaaactgAATAAGCTTCTGTCCTTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002651731.1 True 1430 lncRNA 0.35 3 13914084 13917087
XR_002651732.1 False 1317 lncRNA 0.35 4 13914084 13917087

Neighbor

gene id symbol gene type direction distance location
LOC103030231 NA coding upstream 9046 13902767 ~ 13905038 (+)
LOC103039331 si:dkeyp-92c9.3,LOC108273295,LOC107672858,LOC107702514,LOC106570358,LOC107738593,LOC108411155,LOC107731552,LOC107571466 coding upstream 119972 13670343 ~ 13794112 (+)
LOC103043039 NA coding upstream 247756 13659887 ~ 13666328 (+)
LOC103042421 NA coding upstream 445981 13463299 ~ 13468103 (+)
LOC103036495 NA coding upstream 450848 13454703 ~ 13463236 (+)
LOC111195557 NA coding downstream 69950 13987037 ~ 13988938 (+)
col28a1 NA coding downstream 384823 14301910 ~ 14339402 (+)
sdhaf3 sdhaf3 coding downstream 432970 14350057 ~ 14364677 (+)
jarid2 jarid2 coding downstream 1160457 15077544 ~ 15259664 (+)
mylip mylip,mylipa,LOC107754815,LOC107731572,LOC107694366 coding downstream 1483836 15400923 ~ 15434466 (+)
G197487 NA non-coding upstream 13665 13898963 ~ 13900419 (+)
G197480 NA non-coding upstream 37432 13869546 ~ 13876652 (+)
G197459 NA non-coding upstream 196082 13717286 ~ 13718002 (+)
LOC103039008 NA non-coding upstream 255431 13653684 ~ 13658653 (+)
G197410 NA non-coding upstream 308126 13586233 ~ 13605958 (+)
G197495 ptp4a3,LOC103031245,LOC108413163,LOC107702466,LOC107571462,LOC108272580,LOC107598212,LOC107738588,LOC107731571 non-coding downstream 261 13917348 ~ 14032282 (+)
G197496 NA non-coding downstream 29427 13946514 ~ 13972743 (+)
G197547 NA non-coding downstream 152717 14069804 ~ 14074420 (+)
G197550 NA non-coding downstream 210344 14127431 ~ 14139128 (+)
G197555 NA non-coding downstream 258252 14175339 ~ 14175670 (+)
G197334 LOC108441809 other upstream 551426 13324386 ~ 13362658 (+)
s100a14 s100a14,LOC108442988 other upstream 949735 12956670 ~ 12964349 (+)
LOC103029421 NA other upstream 985557 12889358 ~ 12928527 (+)
G197106 NA other upstream 1139588 12715368 ~ 12774496 (+)
grhl2 grhl2,LOC107748368,LOC107550099,LOC107738316,LOC107698657,LOC107672862,LOC107552317 other upstream 2167849 11687399 ~ 11746235 (+)
rpa3 NA other downstream 359704 14276791 ~ 14293068 (+)
tac1 tac1 other downstream 549178 14466265 ~ 14468882 (+)
G197665 NA other downstream 877333 14794420 ~ 14796728 (+)
LOC103030137 prrc2a,LOC101471845,LOC102784426,LOC102311189 other downstream 1844836 15761923 ~ 15789854 (+)
ppp1r11 ppp1r11,LOC107694341 other downstream 2404855 16321942 ~ 16330240 (+)

Expression


Co-expression Network