LOC103041709


Basic Information

Item Value
gene id LOC103041709
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 25297042 ~ 25300856 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002651734.1
GGCTTTTCCAAAGCTTAAGACAATACATGGAGGCTGATTTCTTCACAAAGCATCCGGTATTTTGGGAACAGAGCAAGACCAGAATAAAGTGCAAGACTTTGCATATGACTGGGATCCACCTGGTGTAACTGATACCAACAGGACATGGCTTTTTTTCAAAAGACGCACCTTCATGATGTAATTGAATGAACACTGATgcaaatcaaacaaatgagacGTGGCCCTAAGGAAACACCAATGTGGACAGTTTTGCTCCAACAGCTAGATGCAGTGCTCCTGCTTTTCCCAAAAAGAATCAATGGAATTTACTCAAGAGTTGCTGGTCTGCGGAGAAGAATTCTGATTCTGAATATCCACTTGCTCAAGTGTGCTACACTTCTGGATTCCGCTGACAGTTTATTGAATCTGCATCGACTGCTGAGGTCCAAAGCCTGCTGAAGGTCTGGACAGGCATTTGAGGTGGTCTTGATTGGAACATGGCAGACAGCTGAATGAGTCCTCTTGCCTGTAGGACGGAAAGCATCCCCCACATTGCGGACCAGCCCATCTGAAGTGTAGGTAGTATACAGTCAGAAAAGGAGATGGAGAAGACCATCCCTTTGGCAACTTTCAACAGGCCTGGAACTCAACGCAAGACAGTTACCTGGGAAGTACAAGGCTGCTCCACTTCACAGGGAACAACTACAGCACCACTTTGTGACCAGACAAGATGCTGTGGGACACATCCAAACCTGCTGCTCTCCTGATCGTGGGCAGGGAATGGGAATGGGCAGGAAAGCAGGAAGGCACACTACTACATGGCATAATCCTGCagtacacttttttttcactgtgtaaaaaacaaaacggGAAAGAAAGTAAATGCATGATTTGTACATATCCCCATACACAGAGTGTGTTCCTACATTTATTAAACTGTCTTATGAAGATGCTTCATGTACAaatctgttttaaacatttgcattttaaactgtgtatgtttatttttacttattttttgacAAACATTAGTTtcaaagtgataaaaaaaataatagtgtcAAAACACATACCTTAATGATTATGCCAAAAATAGCATGACGCAGCCACATCAGAGAAAGCTTTGACAAGGCAGTTGGTTGTACTGCTGACCTAAGAACCTCAAGACTCCAGGGATCAAGGGGGCATTCCAAGTGCAAGCAGTGTGGTTCTTGGACGGTCAATCTAGAATGTTTCAAGTCAATGGCATCAATCTGTATTCCCTAAGTGTACAGAGTTCAGTAATAGTGTTAATTGTGTACACTTGTAATCACAAAGACAATCAAACAATGTTACTGATCACTTCTGAGATTTCTGGTTTGTTGACAATTCTGCATGGGACTGAAGTACTACAGCAGATTTAGGTtaatgttttgttcattttgaatTGGATTACTATCCCAGTCGTATGCAAACCTTGGCAGGTCATCTTTCAGTCATGGCAGGAATGTATAGTGAACACAGATGTCTAATGTTGAGAAGTCATCCTCTTTCAAAGTGTGAAGAACATTGTAGTACGGTCATCTACACATCATGTCACAGACATTCTATTTTGCAGGAAAGAAAATGATTAACAGATGTATTGCTTAACAGTGCACCATACATCATTTACCAGAAGTTTACTACAGGCATAAGTTTGCTTTTCTtgataattacattactttagACTGTTCTTAAACTGCATTCATTAGAATTATCATTGCAGAAATTAAGACAGTAATATGACCCAGTGCCATAAAATGTTCATCAGCTCAAATTCTGATTGTGGACACCTGACTGATATAAAGCTTCTACACACAGTTCCAAATATAGTGAACACTTCTGGAGAAATTTCCATATTCTTCTCACCCTGGAAGTGGGTATAGTAACATTTACTTATGGTGGTGACAAAACCATAGACCTCTGGAGTTGTGCCTTCATTTTGTAGTTGGCActatgttgtttatgcccacaTGTGGCACTTCAGGTCTAACCATAACTTTAGATATCAGAAATGAAACaggtttaatacaaaaaaatcatctgtagtaaataaatgttttctgaaccca
>XR_455590.3
GGGCTTTTCCAAAGCTTAAGACAATACATGGAGGCTGATTTCTTCACAAAGCATCCGGTATTTTGGGAACAGTCTGAACTTACAGAGCAAGACCAGAATAAAGTGCAAGACTTTGCATATGACTGGGATCCACCTGGTGTAACTGATACCAACAGGACATGGCTTTTTTTCAAAAGACGCACCTTCATGATGTAATTGAATGAACACTGATgcaaatcaaacaaatgagacGTGGCCCTAAGGAAACACCAATGTGGACAGTTTTGCTCCAACAGCTAGATGCAGTGCTCCTGCTTTTCCCAAAAAGAATCAATGGAATTTACTCAAGAGTTGCTGGTCTGCGGAGAAGAATTCTGATTCTGAATATCCACTTGCTCAAGTGTGCTACACTTCTGGATTCCGCTGACAGTTTATTGAATCTGCATCGACTGCTGAGGTCCAAAGCCTGCTGAAGGTCTGGACAGGCATTTGAGGTGGTCTTGATTGGAACATGGCAGACAGCTGAATGAGTCCTCTTGCCTGTAGGACGGAAAGCATCCCCCACATTGCGGACCAGCCCATCTGAAGTGTAGGTAGTATACAGTCAGAAAAGGAGATGGAGAAGACCATCCCTTTGGCAACTTTCAACAGGCCTGGAACTCAACGCAAGACAGTTACCTGGGAAGTACAAGGCTGCTCCACTTCACAGGGAACAACTACAGCACCACTTTGTGACCAGACAAGATGCTGTGGGACACATCCAAACCTGCTGCTCTCCTGATCGTGGGCAGGGAATGGGAATGGGCAGGAAAGCAGGAAGGCACACTACTACATGGCATAATCCTGCagtacacttttttttcactgtgtaaaaaacaaaacggGAAAGAAAGTAAATGCATGATTTGTACATATCCCCATACACAGAGTGTGTTCCTACATTTATTAAACTGTCTTATGAAGATGCTTCATGTACAaatctgttttaaacatttgcattttaaactgtgtatgtttatttttacttattttttgacAAACATTAGTTtcaaagtgataaaaaaaataatagtgtcAAAACACATACCTTAATGATTATGCCAAAAATAGCATGACGCAGCCACATCAGAGAAAGCTTTGACAAGGCAGTTGGTTGTACTGCTGACCTAAGAACCTCAAGACTCCAGGGATCAAGGGGGCATTCCAAGTGCAAGCAGTGTGGTTCTTGGACGGTCAATCTAGAATGTTTCAAGTCAATGGCATCAATCTGTATTCCCTAAGTGTACAGAGTTCAGTAATAGTGTTAATTGTGTACACTTGTAATCACAAAGACAATCAAACAATGTTACTGATCACTTCTGAGATTTCTGGTTTGTTGACAATTCTGCATGGGACTGAAGTACTACAGCAGATTTAGGTtaatgttttgttcattttgaatTGGATTACTATCCCAGTCGTATGCAAACCTTGGCAGGTCATCTTTCAGTCATGGCAGGAATGTATAGTGAACACAGATGTCTAATGTTGAGAAGTCATCCTCTTTCAAAGTGTGAAGAACATTGTAGTACGGTCATCTACACATCATGTCACAGACATTCTATTTTGCAGGAAAGAAAATGATTAACAGATGTATTGCTTAACAGTGCACCATACATCATTTACCAGAAGTTTACTACAGGCATAAGTTTGCTTTTCTtgataattacattactttagACTGTTCTTAAACTGCATTCATTAGAATTATCATTGCAGAAATTAAGACAGTAATATGACCCAGTGCCATAAAATGTTCATCAGCTCAAATTCTGATTGTGGACACCTGACTGATATAAAGCTTCTACACACAGTTCCAAATATAGTGAACACTTCTGGAGAAATTTCCATATTCTTCTCACCCTGGAAGTGGGTATAGTAACATTTACTTATGGTGGTGACAAAACCATAGACCTCTGGAGTTGTGCCTTCATTTTGTAGTTGGCActatgttgtttatgcccacaTGTGGCACTTCAGGTCTAACCATAACTTTAGATATCAGAAATGAAACaggtttaatacaaaaaaatcatctgtagtaaataaatgttttctgaaccca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002651734.1 False 2069 lncRNA 0.40 6 25297043 25300856
XR_455590.3 True 2083 lncRNA 0.40 6 25297042 25300856

Neighbor

gene id symbol gene type direction distance location
csmd2 csmd2,LOC107698986 coding upstream 221251 24648033 ~ 25075791 (+)
LOC103034043 NA coding upstream 1045653 24241364 ~ 24251389 (+)
ilf2 ilf2,LOC105924049,LOC106569884 coding upstream 1348049 23942554 ~ 23948993 (+)
hpcal4 hpcal4,LOC107691524,LOC103358777,LOC107396335,LOC107562761 coding upstream 1365002 23898683 ~ 23932040 (+)
trit1 trit1 coding upstream 1541485 23688512 ~ 23755557 (+)
trappc3 trappc3 coding downstream 69645 25370501 ~ 25377202 (+)
col8a2 col8a2,LOC107564494,LOC107724334,LOC107565043,LOC107710560 coding downstream 115712 25416568 ~ 25526086 (+)
LOC103042327 ptp4a2,LOC103042327,LOC108257240,LOC105012508,LOC107564493,LOC107670276 coding downstream 228548 25529404 ~ 25560124 (+)
anln NA coding downstream 266816 25567672 ~ 25579392 (+)
ak2 ak2,LOC107556372,LOC107710539,LOC107653866,LOC107670285 coding downstream 280132 25580988 ~ 25587640 (+)
LOC111195489 NA non-coding upstream 184767 25111809 ~ 25112275 (+)
G199588 NA non-coding upstream 859003 24437805 ~ 24438039 (+)
G199546 NA non-coding upstream 1076428 24220361 ~ 24220614 (+)
G199469 NA non-coding upstream 1123116 24121268 ~ 24173926 (+)
G199424 NA non-coding upstream 1511083 23782931 ~ 23785959 (+)
G199669 NA non-coding downstream 7786 25308642 ~ 25308947 (+)
G199683 NA non-coding downstream 76541 25377397 ~ 25378146 (+)
G199684 NA non-coding downstream 77723 25378579 ~ 25378825 (+)
G199691 NA non-coding downstream 216041 25516897 ~ 25548341 (+)
G199739 wisp1,LOC108425715,LOC107670277,LOC107710734,LOC107574716,LOC107724346,LOC105022817 non-coding downstream 623363 25924219 ~ 25925353 (+)
znf704 znf704,LOC107702114,LOC107555575,LOC107696217 other upstream 2427785 22830231 ~ 22869257 (+)
G199091 stk3,LOC105907728,LOC107724280,LOC107702102 other upstream 3074006 22219265 ~ 22223036 (+)
LOC103037930 NA other upstream 3914042 21358464 ~ 21383000 (+)
G198815 NA other upstream 4494152 20802371 ~ 20802890 (+)
mrpl36 mrpl36 other upstream 5022188 20273021 ~ 20274854 (+)
ndufs5 ndufs5 other downstream 317072 25617928 ~ 25620135 (+)
c23h18orf21 LOC103027551 other downstream 1285383 26586239 ~ 26613188 (+)
cdk6 cdk6,LOC107667775,LOC107567973,LOC107722162,LOC107558583,LOC106588946 other downstream 1531098 26831954 ~ 26892623 (+)
G200104 NA other downstream 1983364 27284220 ~ 27284567 (+)
LOC103023645 gngt1,LOC103023645,LOC108257427,LOC103152523,LOC103362787,LOC107085869 other downstream 2003665 27304521 ~ 27305586 (+)

Expression


Co-expression Network