trnap-agg_7


Basic Information

Item Value
gene id trnap-agg_7
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 10215148 ~ 10215219 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>trnap-agg_7
tgctcgttggtctaggggtatgattctcgcttagggtgcgagaggtcccgggttcaaatcccggacgagccc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnap-agg_7 True 72 tRNA 0.61 1 10215148 10215219

Neighbor

gene id symbol gene type direction distance location
trnap-ugg_5 NA coding upstream 86 10214991 ~ 10215062 (+)
LOC111195551 NA coding upstream 33916 10180453 ~ 10181232 (+)
LOC103044437 trim46,trim46b,LOC108437912,LOC108272350,LOC107589413,LOC107750805,LOC107693334 coding upstream 200851 9986802 ~ 10014297 (+)
LOC103047595 cers2,LOC103047595,LOC108437916,LOC107750802,LOC107599505,LOC107693338,LOC107678801,LOC107739494 coding upstream 537328 9642177 ~ 9677820 (+)
LOC103027509 NA coding upstream 624238 9560563 ~ 9590910 (+)
trnap-agg_8 NA coding downstream 130 10215349 ~ 10215419 (+)
trnap-ugg_6 NA coding downstream 445 10215664 ~ 10215736 (+)
trnap-agg_9 NA coding downstream 776 10215995 ~ 10216065 (+)
trnap-ugg_7 NA coding downstream 1450 10216669 ~ 10216738 (+)
trnap-agg_10 NA coding downstream 1625 10216844 ~ 10216915 (+)
G196534 NA non-coding upstream 84384 10130502 ~ 10130764 (+)
G196531 NA non-coding upstream 130373 10081012 ~ 10084775 (+)
G196473 NA non-coding upstream 286832 9901167 ~ 9928316 (+)
G196467 NA non-coding upstream 413785 9786060 ~ 9801363 (+)
G196464 NA non-coding upstream 441379 9773508 ~ 9773769 (+)
G196570 NA non-coding downstream 28922 10244141 ~ 10248266 (+)
G196572 NA non-coding downstream 46355 10261574 ~ 10261843 (+)
G196573 jupb,LOC108438403,LOC107562513,LOC107666348,LOC107665165,LOC107549862 non-coding downstream 47818 10263037 ~ 10263379 (+)
G196618 NA non-coding downstream 254579 10469798 ~ 10470148 (+)
G196619 eif1b,LOC103043673,LOC107549864,LOC107666344,LOC107665169 non-coding downstream 266188 10481407 ~ 10484765 (+)
dpm3 dpm3,LOC107678800,LOC107693280,LOC107750811 other upstream 154049 10058139 ~ 10061099 (+)
LOC103026923 si:ch211-39a7.1,LOC108437914,LOC107599586,LOC107678794,LOC107750809,LOC107693335,LOC107739611,LOC108273254,LOC107589479 other upstream 326931 9774379 ~ 9888217 (+)
G196419 NA other upstream 474380 9740359 ~ 9740768 (+)
G196415 NA other upstream 493878 9720783 ~ 9721270 (+)
LOC103046684 LOC106605923,LOC107589412,LOC107582081,LOC107699547,LOC108429942 other upstream 510439 9700740 ~ 9704709 (+)
G196633 NA other downstream 276327 10491546 ~ 10492101 (+)
samd14 samd14 other downstream 795822 11011041 ~ 11031269 (+)
mrpl24 mrpl24,LOC107559719,LOC107669969,LOC107693309,LOC107580210 other downstream 1186936 11402155 ~ 11417703 (+)
polr2k NA other downstream 1336441 11551660 ~ 11554583 (+)
grhl2 grhl2,LOC107748368,LOC107550099,LOC107738316,LOC107698657,LOC107672862,LOC107552317 other downstream 1472180 11687399 ~ 11746235 (+)

Expression


Co-expression Network