trnat-cgu_1


Basic Information

Item Value
gene id trnat-cgu_1
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 36877823 ~ 36877894 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>trnat-cgu_1
GGCGCGGTGGCCAAGTGGTAAGGCGTCGGTCTCGTAAACCGAAGATCGCGGGTTCGAACCCCGTCCGTGcct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnat-cgu_1 True 72 tRNA 0.65 1 36877823 36877894

Neighbor

gene id symbol gene type direction distance location
LOC103040671 galr2b,LOC103040671,LOC108433115,LOC107674614,LOC107753547,LOC107564701,LOC107703387 coding upstream 199901 36651834 ~ 36677922 (+)
zfand2a zfand2a,LOC107568938 coding upstream 297452 36566207 ~ 36580371 (+)
mrm2 mrm2 coding upstream 1059237 35811037 ~ 35818586 (+)
snx8 snx8,LOC107758331,LOC107592787 coding upstream 1078823 35775028 ~ 35799000 (+)
lfng lfng,LOC107674646,LOC107703400,LOC107758333 coding upstream 1262012 35601601 ~ 35615811 (+)
zc3h7a zc3h7a coding downstream 74013 36951907 ~ 36973852 (+)
LOC103045472 LOC108433148,LOC107727127,LOC107674682,LOC107745580,LOC799265,LOC105013234,LOC106607346 coding downstream 132801 37010695 ~ 37025525 (+)
nsmce1 nsmce1 coding downstream 210307 37088201 ~ 37096868 (+)
LOC103021790 LOC103021790,LOC108433116,LOC103481129 coding downstream 1129627 38007521 ~ 38058413 (+)
G202341 NA non-coding upstream 205407 36671991 ~ 36672416 (+)
G202311 NA non-coding upstream 361895 36515648 ~ 36515928 (+)
G202307 NA non-coding upstream 407574 36409580 ~ 36470249 (+)
G202269 NA non-coding upstream 548127 36196592 ~ 36329696 (+)
G202268 NA non-coding upstream 615552 36158978 ~ 36262271 (+)
LOC111195542 NA non-coding downstream 3466 36881360 ~ 36914738 (+)
G202394 NA non-coding downstream 153329 37031223 ~ 37032350 (+)
G202400 NA non-coding downstream 159494 37037388 ~ 37037645 (+)
G202405 NA non-coding downstream 181624 37059518 ~ 37060161 (+)
G202406 NA non-coding downstream 183361 37061255 ~ 37063186 (+)
LOC111195488 NA other upstream 1753205 35106038 ~ 35124618 (+)
psmg3 psmg3 other upstream 3062837 33811432 ~ 33814986 (+)
G201466 LOC102799139,LOC107581721 other upstream 3602916 33260173 ~ 33274907 (+)
bud31 bud31,LOC107737741,LOC107720055 other upstream 3899913 32974320 ~ 32977910 (+)
G201445 flii,LOC107581766,LOC107737969,LOC107703428,LOC107674686 other upstream 3949904 32923528 ~ 32927919 (+)
LOC103041887 NA other downstream 105429 36983323 ~ 36993332 (+)

Expression


Co-expression Network