trnav-cac_40


Basic Information

Item Value
gene id trnav-cac_40
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 8950354 ~ 8950426 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>trnav-cac_40
gtttctgtagtgtagtggttatcACGTTCGCCTCACACGCGAAAGGTCCCTGGTTCGAAACCAGGCAGAAACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnav-cac_40 True 73 tRNA 0.51 1 8950354 8950426

Neighbor

gene id symbol gene type direction distance location
trnav-aac_52 NA coding upstream 117 8950165 ~ 8950237 (+)
trnav-cac_39 NA coding upstream 307 8949975 ~ 8950047 (+)
trnav-cac_38 NA coding upstream 497 8949785 ~ 8949857 (+)
trnav-cac_37 NA coding upstream 687 8949595 ~ 8949667 (+)
trnav-cac_36 NA coding upstream 877 8949405 ~ 8949477 (+)
trnav-cac_41 NA coding downstream 117 8950543 ~ 8950615 (+)
trnav-cac_42 NA coding downstream 307 8950733 ~ 8950805 (+)
trnav-aac_53 NA coding downstream 497 8950923 ~ 8950995 (+)
trnav-cac_43 NA coding downstream 687 8951113 ~ 8951185 (+)
trnav-aac_54 NA coding downstream 877 8951303 ~ 8951375 (+)
G196314 NA non-coding upstream 18995 8931149 ~ 8931359 (+)
G196286 NA non-coding upstream 100728 8849360 ~ 8849626 (+)
G196259 NA non-coding upstream 146508 8803118 ~ 8803846 (+)
G196257 NA non-coding upstream 153968 8792633 ~ 8796386 (+)
G196238 NA non-coding upstream 169398 8741530 ~ 8780956 (+)
G196317 NA non-coding downstream 387643 9338069 ~ 9338819 (+)
G196329 NA non-coding downstream 427491 9377917 ~ 9427544 (+)
G196327 NA non-coding downstream 431324 9381750 ~ 9382549 (+)
G196396 NA non-coding downstream 657096 9607522 ~ 9608821 (+)
G196411 NA non-coding downstream 761464 9711890 ~ 9712641 (+)
G196232 NA other upstream 270384 8679284 ~ 8679970 (+)
LOC103033741 grik5,LOC108433750,LOC107549838,LOC107752523,LOC100331381,LOC107666346 other upstream 544885 8143873 ~ 8405469 (+)
G195793 NA other upstream 1656661 7293313 ~ 7293693 (+)
tapbp tapbp other upstream 1823240 7120612 ~ 7127114 (+)
LOC103021434 rxrba,LOC107566635,LOC107751683,LOC107694777,LOC107729870,LOC108272672 other upstream 2003198 6922288 ~ 6947156 (+)
mrps21 mrps21 other downstream 584003 9534429 ~ 9539648 (+)
LOC103046991 celf3a,LOC108437918,LOC107750801,LOC108272714 other downstream 652901 9603327 ~ 9638916 (+)
LOC103046684 LOC106605923,LOC107589412,LOC107582081,LOC107699547,LOC108429942 other downstream 750314 9700740 ~ 9704709 (+)
G196415 NA other downstream 770357 9720783 ~ 9721270 (+)
G196419 NA other downstream 789933 9740359 ~ 9740768 (+)

Expression


Co-expression Network