G298868


Basic Information

Item Value
gene id G298868
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172830.1
NCBI id APWO02000048.1
chromosome length 5891159
location 134716 ~ 135216 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU411118
ccactgatgtaattattaaaatctttatttcctGGATATCAGCAGGATTTACAGAGTAAATTATAACACATATTATTACATTTCTAAGTACAGTACATGGTCTGGACTTTACAGcaataaagagaagagaagtgaGAGCCCTGAGAacagtatagagtatagagtgtagagtagagtaaagagtagagtagagtatagagtagagtagagtatagagtaaagagtatagagtaaagagtatagagtagagTATAGATGAGTACAGGGGTGAATTAGAGTTAGATCTTGACGCCTCTCTCAGTGAAGAGCTGCTGCAGTTTTTCCTCCAGAACCGGATTCGTCCCACGCAGTCCTTTCACCACCTGCCCCGCCCACAGGAAGTACTCCTGAACCCGCTCAGC
>TU411119
ccactgatgtaattattaaaatctttatttcctGGATATCAGCAGGATTTACAGAGTAAATTATAACACATATTATTACATTTCTAAGTACAGTACATGGTCTGGACTTTACAGcaataaagagaagagaagtgaGAGCCCTGAGAacagtatagagtatagagtgtagagtagagtaaagagtagagtagagtatagagtagagtagagtatagagtaaagagtatagagtaaagagtatagagtagagtatagagtagagtagagtatagagtatagagtagagTATAGATGAGTACAGGGGTGAATTAGAGTTAGATCTTGACGCCTCTCTCAGTGAAGAGCTGCTGCAGTTTTTCCTCCAGAACCGGATTCGTCCCACGCAGTCCTTTCACCACCTGCCCCGCCCACAGGAAGTACTCCTGAACCCGCTCAGC
>TU411120
ccactgatgtaattattaaaatctttatttcctGGATATCAGCAGGATTTACAGAGTAAATTATAACACATATTATTACATTTCTAAGTACAGTACATGGTCTGGACTTTACAGcaataaagagaagagaagtgaGAGCCCTGAGAacagtatagagtatagagtagagtatagagtaaagagtatagagtagagtatagagtagagtagagtagagtatagagtaaagagtatagagtagagTATAGATGAGTACAGGGGTGAATTAGAGTTAGATCTTGACGCCTCTCTCAGTGAAGAGCTGCTGCAGTTTTTCCTCCAGAACCGGATTCGTCCCACGCAGTCCTTTCACCACCTGCCCCGCCCACAGGAAGTACTCCTGAACCCGCTCAGC
>TU411121
ccactgatgtaattattaaaatctttatttcctGGATATCAGCAGGATTTACAGAGTAAATTATAACACATATTATTACATTTCTAAGTACAGTACATGGTCTGGACTTTACAGcaataaagagaagagaagtgaGAGCCCTGAGAacagtatagagtatagagtgtagagtagagtaaagagtagagtagagtatagagtagagtagagtatagagtaaagagtatagagtagagtatagagtaaagactatagagtagagtatagagtatagagTATAGATGAGTACAGGGGTGAATTAGAGTTAGATCTTGACGCCTCTCTCAGTGAAGAGCTGCTGCAGTTTTTCCTCCAGAACCGGATTCGTCCCACGCAGTCCTTTCACCACCTGCCCCGCCCACAGGAAGTACTCCTGAACCCGCTCAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU411118 False 401 lncRNA 0.41 2 134716 135216
TU411119 True 437 lncRNA 0.40 2 134716 135216
TU411120 False 394 lncRNA 0.41 3 134716 135216
TU411121 False 427 lncRNA 0.40 3 134716 135216

Neighbor

gene id symbol gene type direction distance location
hypk hypk,LOC107596440,LOC107695358 coding upstream 8128 124276 ~ 126588 (+)
vps33b vps33b,LOC106587690 coding downstream 3039 138255 ~ 153748 (+)
ttc17 ttc17,LOC107600454,LOC107695362 coding downstream 32455 167671 ~ 190488 (+)
LOC103024613 dh12b,hsd17b12b,LOC108414037,LOC107757588,LOC107701268,LOC107695363,LOC107730274 coding downstream 97590 232806 ~ 261021 (+)
LOC111191160 NA coding downstream 348554 483770 ~ 499002 (+)
LOC103040103 hrasb,hras,LOC107596435,LOC103357265,LOC107562835 coding downstream 554041 689257 ~ 701417 (+)
G298875 NA non-coding upstream 19167 115335 ~ 115549 (+)
G298866 NA non-coding upstream 36046 98447 ~ 98670 (+)
G298864 NA non-coding upstream 38421 95930 ~ 96295 (+)
G298858 NA non-coding upstream 60082 73214 ~ 74634 (+)
G298854 NA non-coding upstream 65930 67365 ~ 68786 (+)
G298880 NA non-coding downstream 10760 145976 ~ 146693 (+)
G298890 NA non-coding downstream 75742 210958 ~ 212769 (+)
G298903 NA non-coding downstream 160987 296203 ~ 331116 (+)
G298997 NA non-coding downstream 304697 439913 ~ 440117 (+)
G299003 NA non-coding downstream 335646 470862 ~ 473103 (+)
G298859 NA other upstream 56036 78480 ~ 78680 (+)
LOC111191161 NA other upstream 67529 52791 ~ 67187 (+)
prc1 prc1 other downstream 19749 154965 ~ 166097 (+)
G299000 apip other downstream 327198 462414 ~ 470620 (+)
G299046 NA other downstream 569944 705160 ~ 706824 (+)
G299226 NA other downstream 1082593 1217809 ~ 1218106 (+)
G299236 NA other downstream 1189204 1324420 ~ 1324854 (+)

Expression


Co-expression Network