G298890


Basic Information

Item Value
gene id G298890
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172830.1
NCBI id APWO02000048.1
chromosome length 5891159
location 210958 ~ 212769 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU411150
GATACGAGGTCTGGACGTGCACCAGCAGCAGGTCCTTCACGAGTCTTTTTGCGGTCTGGGCTTGCTGTTCGTGATTCCACCGGAAGCCCTTACCCCAAAAAGCATTCGCGGAGGGCACACGCGCCGGGAGACTCACGTCAACCACGAGGACTGTATTACATTACGATACATCACATTACGATATATCACATTGCAATATATCACATTACAACATATCACATTACGACATATCACAATGCGATATATCATATTACGATATATCGCATTACAGTATATCACATTAAGATATATGTATCACATGATATTTCACATTGTGACATATCACATTACAATATATAACTTTACAATATATCACATTATGATATGTCTTATTATGATATTTGACATTACAATATTTCACATTACGACATATCACATTACAACATATTACATTGCAACATCACATTACGATATATTACATTGTGATACATTACATTTCAATATATCACATGACGATATATCACATTACGATGTTGTGttgtggtggttgctgtagtgttattattagagtgaataaatgaatgcatgtattacagagagacaggggaggaagtCCTGCTGTCTCGCCATGTGTTCACGCAGGACACTAACCTACAGGAATCACCACGCGTTGCCGGTTGCAGCAGCACTGTgttgtggtggttgctgtggtgttacaaGAGAAGTGAATAAACTAACAGACGTGTGCCGTTTACAGAGAGAGATGCTGCGCTGCTCCTGTGCAACATGTGTcgtttaatttgttattttacgtattttttgttctgcttttgcgtatctgtaaataatacatttaccagcagcagcagaagattcTGCACACCTGTATGGAGAAAATGATATTCTGATTTTGCATCCCAATCTTAATCCAAAGGGTTTAATATGATATCAGACGACTCTTTACAGCTATAACAGCTTTAGCTGTTTTCCACAAgctttaggagtgtgtttatgggaatttttTACCATTCAGGTGTatagtgactctgcagaaagttggtgaactgttattttacactgcagagcacagagtcgctgttGTTTCCAGCCTCtttcactgtgttataatatcactgactgttggctgtggaatatttagtagtgaaatttcacgactggacttgttgcacaggtggtGCATCCTATCACGCTGtagtaccacagtgctggagttcactgagctcctgagagagacCTGTCCTTTCACTAGTGTTTGTAGAAGCGTCTGTGGAGACGGAGGAGATTCAGGAACACCTGAGATCAGAGATCTGGATGGAGAAGAAAATAGTTTTGGTAATATAGTAAACATACGTAGCAAAAATTTATGTTTAGTGTacgtttttgtatttattatatttctgcTGCTGTACGGGATGTgacaataaaattaattaatttgaaatcAGCTCACATGTATGTACAatttgtatatgtgtatataaaatataatataatcttatttgagatttttttcatttccctCCTTTCTGACTGCTGTGCTATATGGGATCTCAAAGTGGAGTTATGtgtcataactaagttttgggagtgatccacgccctcactcctcccacttccatccctatttaaaccgtcacttcctctctacctactcattgaacaaacctcgcacccacc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU411150 True 1677 lncRNA 0.39 2 210958 212769

Neighbor

gene id symbol gene type direction distance location
ttc17 ttc17,LOC107600454,LOC107695362 coding upstream 20470 167671 ~ 190488 (+)
vps33b vps33b,LOC106587690 coding upstream 57210 138255 ~ 153748 (+)
hypk hypk,LOC107596440,LOC107695358 coding upstream 84370 124276 ~ 126588 (+)
LOC103024613 dh12b,hsd17b12b,LOC108414037,LOC107757588,LOC107701268,LOC107695363,LOC107730274 coding downstream 20037 232806 ~ 261021 (+)
LOC111191160 NA coding downstream 271001 483770 ~ 499002 (+)
LOC103040103 hrasb,hras,LOC107596435,LOC103357265,LOC107562835 coding downstream 476488 689257 ~ 701417 (+)
LOC103023516 brsk2b,LOC108444143,LOC107600443,LOC107730259 coding downstream 652464 865233 ~ 950940 (+)
LOC111191156 NA coding downstream 1013823 1226592 ~ 1229189 (+)
G298880 NA non-coding upstream 64265 145976 ~ 146693 (+)
G298868 NA non-coding upstream 75742 134716 ~ 135216 (+)
G298875 NA non-coding upstream 95409 115335 ~ 115549 (+)
G298866 NA non-coding upstream 112288 98447 ~ 98670 (+)
G298864 NA non-coding upstream 114663 95930 ~ 96295 (+)
G298903 NA non-coding downstream 83434 296203 ~ 331116 (+)
G298997 NA non-coding downstream 227144 439913 ~ 440117 (+)
G299003 NA non-coding downstream 258093 470862 ~ 473103 (+)
G299006 NA non-coding downstream 286446 499215 ~ 499615 (+)
G299028 NA non-coding downstream 421072 633841 ~ 651207 (+)
prc1 prc1 other upstream 44861 154965 ~ 166097 (+)
G298859 NA other upstream 132278 78480 ~ 78680 (+)
LOC111191161 NA other upstream 143771 52791 ~ 67187 (+)
G299000 apip other downstream 249645 462414 ~ 470620 (+)
G299046 NA other downstream 492391 705160 ~ 706824 (+)
G299226 NA other downstream 1005040 1217809 ~ 1218106 (+)
G299236 NA other downstream 1111651 1324420 ~ 1324854 (+)
LOC103047296 NA other downstream 1350069 1562838 ~ 1567078 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G1713044 NA non-coding NC_048585.1 CM023239.2 18080075 ~ 18083417 (+)