G299000 (apip)


Basic Information

Item Value
gene id G299000
gene name apip
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172830.1
NCBI id APWO02000048.1
chromosome length 5891159
location 462414 ~ 470620 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU411298
TCTAACTGCTCTAAATTCTGCTATTACATTGGCAATACTATCTGACAGGAATAAAACAAGCTATACAAGTgtcacattttaaattaagcaCATCTTAAATTAGCCAAATtagtcaaaaagtaaaaagaaaaaaagtactatttaatttttattatttgtaaataaattaatcatatTTACTATGCCTGACATTAGGTATAATAATATgttgtcctattctattggcaacacAATCCTTCAGGGATTAGAAAAGCTTTCACCAAAAAGTGcagtttattctttattcaaaaagagaaaatgacccaaaaatgtaaatatagagTTTTTGTGTGACATCAATAATATGATGTATTAATAACTTGTATCAAttattcatatttacattttaataaaaaaaaatagcagtgaTTTTGGATAAGATCAAAGCTCAGTCATAGCAGCAGATCTGAGGTTCTTCAGCATGATGATAgtggtagtgatgatgatgatgatgatgatggggatggggatgatgatgatagtGGTAGTAACAGCAGTAATCTGTGGCTGATTGGTTGAGGGCTGATGTAATCATGACGTCAGATCAGACGAATCCTGTGGCTTCAGTGGGCGGAGCCGCAGGATCCAGACCGCACTGCTTCATCTGAACGGCGATATCAAAAAGTAATCGTAGCATTCACACATGGTCTTGGCTTTCTCCCCAGACGTAGACTCCGTGTCTCCTGACGAGGACGGCGCAGGAGTCCGGGTACTCCTCCATAGCTCTCGCCATGTGCTCCTTCAGGTCCTTCTCCTCCGGGGTATTCTCAACGATGGGTACAACCAGAGACTCGTCATACctgAAATTAGTGCCGGAGTTTCCTCTCCGAATCCCTTTGATCATCTCCTGGTGGGTGATGCGGAACTCTTTGCCGGGGGTACAGCAGCGTGGCCATCACCGCGGCCTTCGAGTGACTGTGAATAACAGCCTGAGCTCCCCTCATGGTGTAGGCGTTCATGAAGAGCGGGGTGCACTGGCTCTTCTTCAGCTTCTTTGACGCAGGAGGAGCGCTGATGTCCTTCTCGTCTATATCACAGACGAACATGTCCTCCGGCTGT

Function

symbol description
apip Predicted to enable methylthioribulose 1-phosphate dehydratase activity and zinc ion binding activity. Predicted to be involved in L-methionine salvage from methylthioadenosine. Predicted to act upstream of or within apoptotic process and methionine biosynthetic process. Predicted to be active in cytoplasm. Orthologous to human APIP (APAF1 interacting protein).

NR:

description
PREDICTED: methylthioribulose-1-phosphate dehydratase isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU411298 True 1098 TUCP 0.42 5 462414 470620

Neighbor

gene id symbol gene type direction distance location
LOC103024613 dh12b,hsd17b12b,LOC108414037,LOC107757588,LOC107701268,LOC107695363,LOC107730274 coding upstream 201393 232806 ~ 261021 (+)
ttc17 ttc17,LOC107600454,LOC107695362 coding upstream 271926 167671 ~ 190488 (+)
vps33b vps33b,LOC106587690 coding upstream 308666 138255 ~ 153748 (+)
hypk hypk,LOC107596440,LOC107695358 coding upstream 335826 124276 ~ 126588 (+)
LOC111191160 NA coding downstream 13150 483770 ~ 499002 (+)
LOC103040103 hrasb,hras,LOC107596435,LOC103357265,LOC107562835 coding downstream 218637 689257 ~ 701417 (+)
LOC103023516 brsk2b,LOC108444143,LOC107600443,LOC107730259 coding downstream 394613 865233 ~ 950940 (+)
LOC111191156 NA coding downstream 755972 1226592 ~ 1229189 (+)
LOC111191157 NA coding downstream 867151 1337771 ~ 1340796 (+)
G298997 NA non-coding upstream 22297 439913 ~ 440117 (+)
G298903 NA non-coding upstream 131298 296203 ~ 331116 (+)
G298890 NA non-coding upstream 249645 210958 ~ 212769 (+)
G298880 NA non-coding upstream 315721 145976 ~ 146693 (+)
G298868 NA non-coding upstream 327198 134716 ~ 135216 (+)
G299003 NA non-coding downstream 242 470862 ~ 473103 (+)
G299006 NA non-coding downstream 28595 499215 ~ 499615 (+)
G299028 NA non-coding downstream 163221 633841 ~ 651207 (+)
G299049 NA non-coding downstream 221559 692179 ~ 692735 (+)
G299057 NA non-coding downstream 265744 736364 ~ 737381 (+)
prc1 prc1 other upstream 296317 154965 ~ 166097 (+)
G298859 NA other upstream 383734 78480 ~ 78680 (+)
LOC111191161 NA other upstream 395227 52791 ~ 67187 (+)
G299046 NA other downstream 234540 705160 ~ 706824 (+)
G299226 NA other downstream 747189 1217809 ~ 1218106 (+)
G299236 NA other downstream 853800 1324420 ~ 1324854 (+)
LOC103047296 NA other downstream 1092218 1562838 ~ 1567078 (+)
G299477 NA other downstream 1716713 2187333 ~ 2204255 (+)

Expression


Co-expression Network