G299006


Basic Information

Item Value
gene id G299006
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172830.1
NCBI id APWO02000048.1
chromosome length 5891159
location 499215 ~ 499615 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU411309
ttttgggtgtaacgtgaaataataaaccaatcagagtgtctctttaagagctcatcattctctttaagagtagatcaggtgagctctgactttggtggattgctattgtaacggtgcagctacctggacgtgttcaacaaactcttctcagcagaggaaactgagctgctggttgacgctgtgaaggagctccagcagctcatttacgggaacagcaatgttattttatttactattctgtttattgttgatgtaaaagttgggtttgtgctgctgtgtgttcatgtgtgtgtaataagtgggggtgtacgctcggctcggcacggcgcctgtgttaccgagatagtgatgaacgtctgactgttggcgtctgtctaggttgtattcagtcagtggagctc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU411309 True 401 lncRNA 0.45 1 499215 499615

Neighbor

gene id symbol gene type direction distance location
LOC111191160 NA coding upstream 213 483770 ~ 499002 (+)
LOC103024613 dh12b,hsd17b12b,LOC108414037,LOC107757588,LOC107701268,LOC107695363,LOC107730274 coding upstream 238194 232806 ~ 261021 (+)
ttc17 ttc17,LOC107600454,LOC107695362 coding upstream 308727 167671 ~ 190488 (+)
vps33b vps33b,LOC106587690 coding upstream 345467 138255 ~ 153748 (+)
hypk hypk,LOC107596440,LOC107695358 coding upstream 372627 124276 ~ 126588 (+)
LOC103040103 hrasb,hras,LOC107596435,LOC103357265,LOC107562835 coding downstream 189642 689257 ~ 701417 (+)
LOC103023516 brsk2b,LOC108444143,LOC107600443,LOC107730259 coding downstream 365618 865233 ~ 950940 (+)
LOC111191156 NA coding downstream 726977 1226592 ~ 1229189 (+)
LOC111191157 NA coding downstream 838156 1337771 ~ 1340796 (+)
LOC103044962 LOC108259203 coding downstream 884725 1384340 ~ 1413595 (+)
G299003 NA non-coding upstream 26112 470862 ~ 473103 (+)
G298997 NA non-coding upstream 59098 439913 ~ 440117 (+)
G298903 NA non-coding upstream 168099 296203 ~ 331116 (+)
G298890 NA non-coding upstream 286446 210958 ~ 212769 (+)
G298880 NA non-coding upstream 352522 145976 ~ 146693 (+)
G299028 NA non-coding downstream 134226 633841 ~ 651207 (+)
G299049 NA non-coding downstream 192564 692179 ~ 692735 (+)
G299057 NA non-coding downstream 236749 736364 ~ 737381 (+)
G299071 NA non-coding downstream 270505 770120 ~ 771703 (+)
G299072 NA non-coding downstream 270684 770299 ~ 770603 (+)
G299000 apip other upstream 28595 462414 ~ 470620 (+)
prc1 prc1 other upstream 333118 154965 ~ 166097 (+)
G298859 NA other upstream 420535 78480 ~ 78680 (+)
LOC111191161 NA other upstream 432028 52791 ~ 67187 (+)
G299046 NA other downstream 205545 705160 ~ 706824 (+)
G299226 NA other downstream 718194 1217809 ~ 1218106 (+)
G299236 NA other downstream 824805 1324420 ~ 1324854 (+)
LOC103047296 NA other downstream 1063223 1562838 ~ 1567078 (+)
G299477 NA other downstream 1687718 2187333 ~ 2204255 (+)

Expression


Co-expression Network