G299057


Basic Information

Item Value
gene id G299057
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172830.1
NCBI id APWO02000048.1
chromosome length 5891159
location 736364 ~ 737381 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU411394
acattacaatacaataataaacactCAGACActctgagaaacactgagataCACTGAGATACACTCTGTGATACACTCTGAGATACACTAAGACACACTGAGATACACTCTGTGATACACTGAGATACACTCTTTGATACACTCTGAGATACACTAAGACACACTGAGATACACTCTGAGATACACTCTGAGATACACTAAGACACACTGAGATACATTCTGAGATACACTGAGATACATTATGATACACCGAGACACACTTAGATACATTAAGATACAatgagaaacactgagataCACGGAGACACATTAAGATACAATGAGAAACACTGGGGTACAGTAAGATACGTTAGAATACTCTGAGATACAATGAGACAAATTAAGACAAACTCAGATACATTAAGATACACTGATTCAAACTTATATACATTAAGATACACTGAGATACTCTGAGATACAATAAGATGCACTGATTCAAACTGAGATACATTAAGACTCACTGAGACAAAGTGAGACAcactgagacagagtgagacacGCTGTATCCGCTCTGTTCTGAGGGAAATGAAGTTGTGTCTCTGACTGAGAGCTGTCACTGTGGTTCTAAGCTCGAGCTCACTGCGCGCTGTTACGCACCGCCGGAGCGCCTTTACGCAGCCGGAGCGCGCGGGGCTGGGTATTGTGTCAGTGTGATACAGGAGCTGCTGAGGGTCCGAGGCTGGActgggtggatggatagattggtgtatggatggatggagggatggcgTGGTGCAGGACAGGCTGCACTGGCTGATACGAGCTCCTGCTTCAGTATTTAGTGCGCAGAACAGCTCCAACTAGTGACTGCGTGGgtctctggagtgtgtgtgtgtgtggtgctgaaaTGTAGTGCAGGCTTCTGAGGTTTTAGGAGCTTTTCAGTATTtggggaaatatatatatgtttgtgtgtgtgtgtgtgtgtgcagatgtgGTTGGaactccaaataaaac
>TU411395
acattacaatacaataataaacactCAGACActctgagaaacactgaGATACACTGAGATACACTCTGTGATACACTGAGATACACTCTTTGATACACTCTGAGATACACTAAGACACACTGAGATACACTCTGAGATACACTCTGAGATACACTAAGACACACTGAGATACATTCTGAGATACACTGAGATACATTATGATACACCGAGACACACTTAGATACATTAAGATACAatgagaaacactgagataCACGGAGACACATTAAGATACAATGAGAAACACTGGGGTACAGTAAGATACGTTAGAATACTCTGAGATACAATGAGACAAATTAAGACAAACTCAGATACATTAAGATACACTGATTCAAACTTATATACATTAAGATACACTGAGATACTCTGAGATACAATAAGATGCACTGATTCAAACTGAGATACATTAAGACTCACTGAGACAAAGTGAGACAcactgagacagagtgagacacGCTGTATCCGCTCTGTTCTGAGGGAAATGAAGTTGTGTCTCTGACTGAGAGCTGTCACTGTGGTTCTAAGCTCGAGCTCACTGCGCGCTGTTACGCACCGCCGGAGCGCCTTTACGCAGCCGGAGCGCGCGGGGCTGGGTATTGTGTCAGTGTGATACAGGAGCTGCTGAGGGTCCGAGGCTGGActgggtggatggatagattggtgtatggatggatggagggatggcgTGGTGCAGGACAGGCTGCACTGGCTGATACGAGCTCCTGCTTCAGTATTTAGTGCGCAGAACAGCTCCAACTAGTGACTGCGTGGgtctctggagtgtgtgtgtgtgtggtgctgaaaTGTAGTGCAGGCTTCTGAGGTTTTAGGAGCTTTTCAGTATTtggggaaatatatatatgtttgtgtgtgtgtgtgtgtgtgcagatgtgGTTGGaactccaaataaaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU411394 True 996 lncRNA 0.44 2 736364 737381
TU411395 False 952 lncRNA 0.44 2 736364 737381

Neighbor

gene id symbol gene type direction distance location
LOC103040103 hrasb,hras,LOC107596435,LOC103357265,LOC107562835 coding upstream 34947 689257 ~ 701417 (+)
LOC111191160 NA coding upstream 237362 483770 ~ 499002 (+)
LOC103024613 dh12b,hsd17b12b,LOC108414037,LOC107757588,LOC107701268,LOC107695363,LOC107730274 coding upstream 475343 232806 ~ 261021 (+)
ttc17 ttc17,LOC107600454,LOC107695362 coding upstream 545876 167671 ~ 190488 (+)
vps33b vps33b,LOC106587690 coding upstream 582616 138255 ~ 153748 (+)
LOC103023516 brsk2b,LOC108444143,LOC107600443,LOC107730259 coding downstream 127852 865233 ~ 950940 (+)
LOC111191156 NA coding downstream 489211 1226592 ~ 1229189 (+)
LOC111191157 NA coding downstream 600390 1337771 ~ 1340796 (+)
LOC103044962 LOC108259203 coding downstream 646959 1384340 ~ 1413595 (+)
LOC103021976 LOC108438545 coding downstream 681655 1419036 ~ 1429239 (+)
G299049 NA non-coding upstream 43629 692179 ~ 692735 (+)
G299028 NA non-coding upstream 85157 633841 ~ 651207 (+)
G299006 NA non-coding upstream 236749 499215 ~ 499615 (+)
G299003 NA non-coding upstream 263261 470862 ~ 473103 (+)
G298997 NA non-coding upstream 296247 439913 ~ 440117 (+)
G299071 NA non-coding downstream 32739 770120 ~ 771703 (+)
G299072 NA non-coding downstream 32918 770299 ~ 770603 (+)
G299079 NA non-coding downstream 56992 794373 ~ 795114 (+)
G299169 NA non-coding downstream 113304 850685 ~ 851083 (+)
G299181 NA non-coding downstream 124872 862253 ~ 862518 (+)
G299046 NA other upstream 29540 705160 ~ 706824 (+)
G299000 apip other upstream 265744 462414 ~ 470620 (+)
prc1 prc1 other upstream 570267 154965 ~ 166097 (+)
G298859 NA other upstream 657684 78480 ~ 78680 (+)
LOC111191161 NA other upstream 669177 52791 ~ 67187 (+)
G299226 NA other downstream 480428 1217809 ~ 1218106 (+)
G299236 NA other downstream 587039 1324420 ~ 1324854 (+)
LOC103047296 NA other downstream 825457 1562838 ~ 1567078 (+)
G299477 NA other downstream 1449952 2187333 ~ 2204255 (+)
LOC103025330 si:ch211-186j3.6,LOC108442966,LOC108259100,LOC106562040,LOC105022727,LOC107696606,LOC107572394,LOC107712488,LOC107680491,LOC107565684 other downstream 1661336 2398717 ~ 2927862 (+)

Expression


Co-expression Network