G299229


Basic Information

Item Value
gene id G299229
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172830.1
NCBI id APWO02000048.1
chromosome length 5891159
location 1294783 ~ 1295072 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU411610
tcactttcatacctctCCTCGGACAGCTGTTCTTCAGCGGTGGCTCGCAGCGCTGAAGCGcgagaatcctccggttagctgcaatgctaggggttagtggcgagcactttctagaccaggactatgtgaagaagaggggtttgagtcagtagcattagcgccggataaataagctgcagtccgaggctttttccccccgttttttatttttcctctgatcagctgggatgtacagaccgtccgacTGAGGGTAACGTTACTATGAGAGCGGCAGCTGTACGAGCCAAACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU411610 True 290 lncRNA 0.52 1 1294783 1295072

Neighbor

gene id symbol gene type direction distance location
LOC111191156 NA coding upstream 65594 1226592 ~ 1229189 (+)
LOC103023516 brsk2b,LOC108444143,LOC107600443,LOC107730259 coding upstream 343843 865233 ~ 950940 (+)
LOC103040103 hrasb,hras,LOC107596435,LOC103357265,LOC107562835 coding upstream 593366 689257 ~ 701417 (+)
LOC111191160 NA coding upstream 795781 483770 ~ 499002 (+)
LOC103024613 dh12b,hsd17b12b,LOC108414037,LOC107757588,LOC107701268,LOC107695363,LOC107730274 coding upstream 1033762 232806 ~ 261021 (+)
LOC111191157 NA coding downstream 42699 1337771 ~ 1340796 (+)
LOC103044962 LOC108259203 coding downstream 89268 1384340 ~ 1413595 (+)
LOC103021976 LOC108438545 coding downstream 123964 1419036 ~ 1429239 (+)
traf6 traf6 coding downstream 197506 1492578 ~ 1502980 (+)
LOC111188231 NA coding downstream 263422 1558494 ~ 1562029 (+)
G299228 NA non-coding upstream 51307 1242921 ~ 1243476 (+)
G299227 NA non-coding upstream 75878 1218474 ~ 1218905 (+)
G299225 NA non-coding upstream 82740 1211814 ~ 1212043 (+)
G299214 NA non-coding upstream 105628 1135303 ~ 1189155 (+)
G299205 NA non-coding upstream 233108 1052123 ~ 1061675 (+)
G299232 NA non-coding downstream 12542 1307614 ~ 1307851 (+)
G299242 NA non-coding downstream 50432 1345504 ~ 1399995 (+)
G299243 NA non-coding downstream 51593 1346665 ~ 1348801 (+)
G299251 NA non-coding downstream 70367 1365439 ~ 1367927 (+)
G299265 NA non-coding downstream 106359 1401431 ~ 1408618 (+)
G299226 NA other upstream 76677 1217809 ~ 1218106 (+)
G299046 NA other upstream 587959 705160 ~ 706824 (+)
G299000 apip other upstream 824163 462414 ~ 470620 (+)
prc1 prc1 other upstream 1128686 154965 ~ 166097 (+)
G298859 NA other upstream 1216103 78480 ~ 78680 (+)
G299236 NA other downstream 29348 1324420 ~ 1324854 (+)
LOC103047296 NA other downstream 267766 1562838 ~ 1567078 (+)
G299477 NA other downstream 892261 2187333 ~ 2204255 (+)
LOC103025330 si:ch211-186j3.6,LOC108442966,LOC108259100,LOC106562040,LOC105022727,LOC107696606,LOC107572394,LOC107712488,LOC107680491,LOC107565684 other downstream 1103645 2398717 ~ 2927862 (+)
madd madd,LOC107755105 other downstream 3607562 4902634 ~ 5027421 (+)

Expression


Co-expression Network