G299243


Basic Information

Item Value
gene id G299243
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172830.1
NCBI id APWO02000048.1
chromosome length 5891159
location 1346665 ~ 1348801 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU411629
tatcttTAGCATATAGTGCacaaaaaagcaaagcaaataTACAGAAAACGGTCAGATTTAAACAAGATTTACCACAATGAACCTGGAATGGCTAGTTTTGGtagggtagtgcacctcttggtgagagatcggtGACTTTTAAATGCACTCAAATACATTCTTTCCAACTGAGAGACTACAAAAGTGGTGTATTAATGAACCGAGAGAAGCAATATGgttgttttgaaaaatatattatatatatttactgtattatatttagCACATCCTGTAATAGTGCACAACAGCAGTAGCAAagcaaaatgaccaaaaaaacactagatttaaacaaaatttaccACAATGAACCTGGAATGGCTAGTTTTGGtagggtagtgcacctcttggtgagagactggTAACTTTTAAATGCACTTAAATACATTCTGCCCAGTTAACAATAAAATCATACACTCCCTGTTTGAGAATGTCTAagctattataatatttaatatatttaatatattttcagcacagtattttttcagtaaacACCACATCACTCTCCACACAGACTGATATAATAAGTCCTGTAATATTgtgcacaacagcagcagcagagcaaaGCTTCCAAAAAAGCCCTAATTCTTCTCAAATCACTTTATCAGCACTTGGAAACACTTTAAACAAGATTTACCACAGCAGCGTCATCCACCACATTAATACTACAGGTCTGGAGAGAtcagctaaagctaaataaacGCTAAAGCTAAATAAACGGTGGTCAGAAGGTGATTCCCCACTGAAACGCTGAACGCAGGAAATGTCAGCAGACGGAAAAGGTGTGGTTCTGATTATATACGCAGTATCTAGTGTTTAAAGCTAAAAGAATTTATATAATTAAGTACTAAGATACTGAGAAAGAGATGTGATGTAATGCTGTGATGATGTGATGCTTTGATTGATTGGTTCCTTTCGTTTTTATTGGCCAAACGTTTGGTccgtatatatttttcagtctTCAGCAGATCAGTTAAGACCCTCTTTAAAGCAACGGCACTTAAAACAACCCTGTATTTGAGcttaaatacatatattcacACTCATATTCACACTATGGCTgcaaaatatttgaaatatagaTCAGATATAGCAATTAaattaccaggaacaataaacaTGATTGAGAATTTAGACTGAAATGTGCACACTCTGGTGCACTGTGTATTGTAAAATTGCGTTTTCAGCTCGtttcgcactatataTAAGGCGaacttataatccggtgctccttatgtatgaattctaccagtcagataagtattaaggagcagtaaagtcactctgctgaagtacagagttataagggtgttataagagttttcagtaaagtttctccagcactaaggctggagcattagcagcattagccggtAAACCacagcgctaagcactagctctttccccTTTCAGAGGggagtttaaaacaaaaaacaacctaAGTGAGAGTGGAACATTCAGGTGTCTCAGTTTAGCGCTGTTGGGCGGCGTTtactagcggctaatgctaatgctgctgcacccagccttagtgctggagaaacttcgctgaaaactcacccttatacaaatgctgaaaatgtAAGGTTACTGTTTagaagataaatctgtgtagattaacatccagcattttttgtttaagaattacagttctgtttacgTAGGTGGTTCCGCCAGCTTTCCTAGGCAtctttactagtgtcgcttaataatgcgccttataataatgtttgttttgactgaacaaataaatatatatagtgaaaatgtctttaaatatcatgattttaaacatttttacagtatCTCCCGGTTCTACATGTGCACACAATGCTGAAACTATACACTATGCAGCCCtcatactcacactcacactcaaagCCTCTCAACACCCATATCAATCTCGCTCCAGCAAcagacaataaaagaaaagaaagagaaaagagaagaaaagagaagagaaatgagCTGCAGAAGGTAAAGCAGGGCGTTCGTCTCACTTCAGAGCTTTGGGATCCAGCTGAAACAGGGCCAGCATGTCCAGCATCGCCTGTCTGATGTGGTTCCCAAAACG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU411629 True 2113 lncRNA 0.38 2 1346665 1348801

Neighbor

gene id symbol gene type direction distance location
LOC111191157 NA coding upstream 5869 1337771 ~ 1340796 (+)
LOC111191156 NA coding upstream 117476 1226592 ~ 1229189 (+)
LOC103023516 brsk2b,LOC108444143,LOC107600443,LOC107730259 coding upstream 395725 865233 ~ 950940 (+)
LOC103040103 hrasb,hras,LOC107596435,LOC103357265,LOC107562835 coding upstream 645248 689257 ~ 701417 (+)
LOC111191160 NA coding upstream 847663 483770 ~ 499002 (+)
LOC103044962 LOC108259203 coding downstream 35539 1384340 ~ 1413595 (+)
LOC103021976 LOC108438545 coding downstream 70235 1419036 ~ 1429239 (+)
traf6 traf6 coding downstream 143777 1492578 ~ 1502980 (+)
LOC111188231 NA coding downstream 209693 1558494 ~ 1562029 (+)
LOC103044644 NA coding downstream 230309 1579110 ~ 1580936 (+)
G299232 NA non-coding upstream 38814 1307614 ~ 1307851 (+)
G299229 NA non-coding upstream 51593 1294783 ~ 1295072 (+)
G299228 NA non-coding upstream 103189 1242921 ~ 1243476 (+)
G299227 NA non-coding upstream 127760 1218474 ~ 1218905 (+)
G299225 NA non-coding upstream 134622 1211814 ~ 1212043 (+)
G299251 NA non-coding downstream 16638 1365439 ~ 1367927 (+)
G299265 NA non-coding downstream 52630 1401431 ~ 1408618 (+)
G299266 NA non-coding downstream 61185 1409986 ~ 1416618 (+)
G299283 NA non-coding downstream 119080 1467881 ~ 1567890 (+)
LOC111191159 NA non-coding downstream 140870 1489671 ~ 1509389 (+)
G299236 NA other upstream 21811 1324420 ~ 1324854 (+)
G299226 NA other upstream 128559 1217809 ~ 1218106 (+)
G299046 NA other upstream 639841 705160 ~ 706824 (+)
G299000 apip other upstream 876045 462414 ~ 470620 (+)
prc1 prc1 other upstream 1180568 154965 ~ 166097 (+)
LOC103047296 NA other downstream 214037 1562838 ~ 1567078 (+)
G299477 NA other downstream 838532 2187333 ~ 2204255 (+)
LOC103025330 si:ch211-186j3.6,LOC108442966,LOC108259100,LOC106562040,LOC105022727,LOC107696606,LOC107572394,LOC107712488,LOC107680491,LOC107565684 other downstream 1049916 2398717 ~ 2927862 (+)
madd madd,LOC107755105 other downstream 3553833 4902634 ~ 5027421 (+)
G299903 NA other downstream 3819825 5168626 ~ 5170108 (+)

Expression


Co-expression Network