LOC103047296


Basic Information

Item Value
gene id LOC103047296
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172830.1
NCBI id APWO02000048.1
chromosome length 5891159
location 1562838 ~ 1567078 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU411691
CCGGAGCTCTAAATGTATCGAGCTGCGGTGGTTATAAGGTGGATTGAGggctgtttatttggattttatcAGATACAGaattGAGTGGTCTCCTGTTCCAACTTTCTCCTGCTCATGTTGCTGACTTTTCCACCTggtttaattgaattgaatttaccTTCATGAATACACACGATCAGAAGCTGCTGAACGAGGGGAAGAACATGGCATCTACAGAATTCTCCAGTAATCAGCGATCATCCTCTCCTTCACCATGTGGACAAATGCAGAAAAGTCTAGACGAAAAGACAACTcaccactgttcagactgtgggaagaatttTTCTTCAGGGAGTtatctcaaaacacacaaactcattcacactggagagaaaccgtttccCTGTCCAGAGTGTGAGAAGAGTTTTAATCGCCAGACTTCACTTCAGCAACAtctgcgcattcacacaggagagaaaccgtattactgcttaGACTGTGGAAAGACTTTTACTCTACAGAGTAGTCTACAGCTACACCggcgcgttcacactggagagaaaccgtatcaatgTCCAGACTGTGGACAGAATTTTACTACAAGGACAAATCTCAAAagacaccagcgcgttcacactgcagacaaaccGTACCAGTGCCCAGATTGTGGGCAAAGTTTTAAACTTCAGGGTACGCTCCAGCAACATcggcgcattcacactggagagaaaccatatcactgcttaTTCTGCGAGAGAAGTTTTATTCATCTGCGTACGCTCCAAGATCACCAGCGAGTTCACACTGGGGAAAAACCTTATCAGTGTccggactgtgggaagagttttaaacGTCTGGGTACTCTCCAACAACATCggcgcgttcacactggagagaaaccgtttcattgccAAGACTGTGGTCagaattttactcgtcaggctACACTCCAAGAACACCGgcgcattcacaccggagaaaaaccatatcactgctcagactgcggagaaagttttattaaaatgtcaaatctcaaaatacaccagcaggttcacaccggagagaaaccgtatcattGTTCAGATTGCGGGAGGAGTTTTAATCATCAGAGTACGCTCCAggaacaccagcgcattcacactggagaaaaaccgtatcactgcacaGAGTGTGgcaagagttttactcaacatagtaatctc
>XM_022665255.1
CTATTGGCTCCTGGGTTGGAGTAGCGTTCTGCGATTTGATTGGTTGCTTACCGGAGCTCTAAATGTATCGAGCTGCGGTGGTTATAAGGTGGATTGAGggctgtttatttggattttatcAGATACAGaattGAGTGGTCTCCTGTTCCAACTTTCTCCTGCTCATGTTGCTGACTTTTCCACCTggtttaattgaattgaatttaccTTCATGAATACACACGATCAGAAGCTGCTGAACGAGGGGAAGAACATGGCATCTACAGAATTCTCCAGTAATCAGCGATCATCCTCTCCTTCACCATGTGGACAAATGCAGAAAAGTCTAGACGAAAAGACAACTcaccactgttcagactgtgggaagaatttTTCTTCAGGGAGTtatctcaaaacacacaaactcattcacactggagagaaaccgtttccCTGTCCAGAGTGTGAGAAGAGTTTTAATCGCCAGACTTCACTTCAGCAACAtctgcgcattcacacaggagagaaaccgtattactgcttaGACTGTGGAAAGACTTTTACTCTACAGAGTAGTCTACAGCTACACCggcgcgttcacactggagagaaaccgtatcaatgTCCAGACTGTGGACAGAATTTTACTACAAGGACAAATCTCAAAagacaccagcgcgttcacactgcagacaaaccGTACCAGTGCCCAGATTGTGGGCAAAGTTTTAAACTTCAGGGTACGCTCCAGCAACATcggcgcattcacactggagagaaaccatatcactgcttaTTCTGCGAGAGAAGTTTTATTCATCTGCGTACGCTCCAAGATCACCAGCGAGTTCACACTGGGGAAAAACCTTATCAGTGTccggactgtgggaagagttttaaacGTCTGGGTACTCTCCAACAACATCggcgcgttcacactggagagaaaccgtttcattgccAAGACTGTGGTCagaattttactcgtcaggctACACTCCAAGAACACCGgcgcattcacaccggagaaaaaccatatcactgctcagactgcggagaaagttttattaaaatgtcaaatctcaaaatacaccagcaggttcacaccggagagaaaccgtatcattGTTCAGATTGCGGGAGGAGTTTTAATCATCAGAGTACGCTCCAggaacaccagcgcattcacactggagaaaaaccgtatcactgcacaGAGTGTGgcaagagttttactcaacatagtaatctccaacaacaccagcgcattcacactggagagaaaccatatcactgtccagaatgtgggaagagttttaatcgctTGGCTAACTTCAGCcaacatcagcgcattcacactggagagaaaccgtattgcTGCTCAGAATGTGGAAGGAACTTCAGGCACTTAAAGACACTAAAGAGTCACAAGTGTGTCACGAACAGTCTGGAATTGGGAAGCGAGCCTCAAAAACAAGTTTctgaaacatatttataaaaacatgTGAATTTTATTGTAAAGAAAAAGTCTTTCTTATTCAGATTCTAAAGTAAAGTGAAGtgaatcaaatcagattttttttgctcaatgtggctcagatctgattttttcatggctgtgtgaacgtgccaaatc

Function

GO:

id name namespace
GO:0006265 DNA topological change biological_process
GO:0016592 mediator complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU411691 False 1181 TUCP 0.45 2 1562888 1566694
XM_022665255.1 True 1615 mRNA 0.44 2 1562838 1567078

Neighbor

gene id symbol gene type direction distance location
LOC111188231 NA coding upstream 809 1558494 ~ 1562029 (+)
traf6 traf6 coding upstream 59858 1492578 ~ 1502980 (+)
LOC103021976 LOC108438545 coding upstream 133599 1419036 ~ 1429239 (+)
LOC103044962 LOC108259203 coding upstream 149243 1384340 ~ 1413595 (+)
LOC111191157 NA coding upstream 222042 1337771 ~ 1340796 (+)
LOC103044644 NA coding downstream 12032 1579110 ~ 1580936 (+)
tshz3 tshz3,tshz3b,LOC108429148,LOC107570485,LOC107556246,LOC107696607 coding downstream 2090781 3657859 ~ 3745126 (+)
LOC103030650 nr1h3,LOC107689968,LOC107664377,LOC107755109 coding downstream 3295118 4862196 ~ 4894687 (+)
muc15 NA coding downstream 3564815 5131893 ~ 5144884 (+)
dis3l dis3l,LOC107740444,LOC107663953,LOC107664394,LOC107755103 coding downstream 3579891 5146969 ~ 5167298 (+)
LOC111191159 NA non-coding upstream 53449 1489671 ~ 1509389 (+)
G299266 NA non-coding upstream 146220 1409986 ~ 1416618 (+)
G299265 NA non-coding upstream 154220 1401431 ~ 1408618 (+)
G299242 NA non-coding upstream 162843 1345504 ~ 1399995 (+)
G299251 NA non-coding upstream 194911 1365439 ~ 1367927 (+)
G299437 NA non-coding downstream 153844 1720922 ~ 1722099 (+)
G299438 NA non-coding downstream 155156 1722234 ~ 1723281 (+)
G299458 NA non-coding downstream 264960 1832038 ~ 1832901 (+)
G299472 NA non-coding downstream 279161 1846239 ~ 1846495 (+)
G299475 NA non-coding downstream 287507 1854585 ~ 1854786 (+)
G299236 NA other upstream 237984 1324420 ~ 1324854 (+)
G299226 NA other upstream 344732 1217809 ~ 1218106 (+)
G299046 NA other upstream 856014 705160 ~ 706824 (+)
G299000 apip other upstream 1092218 462414 ~ 470620 (+)
prc1 prc1 other upstream 1396741 154965 ~ 166097 (+)
G299477 NA other downstream 620255 2187333 ~ 2204255 (+)
LOC103025330 si:ch211-186j3.6,LOC108442966,LOC108259100,LOC106562040,LOC105022727,LOC107696606,LOC107572394,LOC107712488,LOC107680491,LOC107565684 other downstream 831639 2398717 ~ 2927862 (+)
madd madd,LOC107755105 other downstream 3335556 4902634 ~ 5027421 (+)
G299903 NA other downstream 3601548 5168626 ~ 5170108 (+)
LOC111191166 NA other downstream 3686496 5253574 ~ 5256311 (+)

Expression


Co-expression Network