G299501


Basic Information

Item Value
gene id G299501
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172830.1
NCBI id APWO02000048.1
chromosome length 5891159
location 2333614 ~ 2342102 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU412027
TTATAAATAATACACTCAAATTCacagaataaagaaacaaaacggtgCAGGCCTGGTTCGATGCTGGCGTGCGTTGTGGCCTAAAAACTTAATGGCCGCTTCACTCTAACGAGCCAAAACAAAGGGTTTCAGAGTACCTCAGAGTCCGTGAATCGGAACGGGAGCAAAGCACGTGTTCCGGCCGCATGGAGCGTTTTCCCTCGGAGCCAGAGGAACTTTGAGCCGCGCGGGGACTCAAAGCGCTATCTGGTGGCAGGATTATTGGTCCTGGTGTCCAGCGAAGTCGGGAGAGAGTCCAGAGCCAGTCCAGAGAACAGTCTTTAGGAGCTAGCGCAGAGCAGGCTAATACACGAGGCTACCTAGATACTTAGCCGAGCTGGCTAAGCTAACCGGGCCAGAAGAACTTGCTTAAAGAGATTTTCCCAGCTTTATCTACTAGAACCCGCTCAGTATGGACGTCTTTGTCCTTAAAATTACCGAGTGAGCAATTAATACTGATTATTAGTTCACCCAGTGAGGAACTTTTTCCTCCTCGCCTCCTACTCCTGCCTCGCtg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU412027 True 556 lncRNA 0.50 2 2333614 2342102

Neighbor

gene id symbol gene type direction distance location
LOC103044644 NA coding upstream 752678 1579110 ~ 1580936 (+)
LOC111188231 NA coding upstream 771585 1558494 ~ 1562029 (+)
traf6 traf6 coding upstream 830634 1492578 ~ 1502980 (+)
LOC103021976 LOC108438545 coding upstream 904375 1419036 ~ 1429239 (+)
LOC103044962 LOC108259203 coding upstream 920019 1384340 ~ 1413595 (+)
tshz3 tshz3,tshz3b,LOC108429148,LOC107570485,LOC107556246,LOC107696607 coding downstream 1315757 3657859 ~ 3745126 (+)
LOC103030650 nr1h3,LOC107689968,LOC107664377,LOC107755109 coding downstream 2520094 4862196 ~ 4894687 (+)
muc15 NA coding downstream 2789791 5131893 ~ 5144884 (+)
dis3l dis3l,LOC107740444,LOC107663953,LOC107664394,LOC107755103 coding downstream 2804867 5146969 ~ 5167298 (+)
LOC103028443 crybgx,LOC103028443,LOC105906490,LOC103368872,LOC108259467,LOC102304589,LOC102204928 coding downstream 2856696 5198798 ~ 5205566 (+)
G299496 NA non-coding upstream 17712 2315393 ~ 2315902 (+)
G299494 NA non-coding upstream 27479 2300536 ~ 2306135 (+)
G299475 NA non-coding upstream 478828 1854585 ~ 1854786 (+)
G299472 NA non-coding upstream 487119 1846239 ~ 1846495 (+)
G299458 NA non-coding upstream 500713 1832038 ~ 1832901 (+)
G299510 NA non-coding downstream 815 2342917 ~ 2343342 (+)
G299521 NA non-coding downstream 92436 2434538 ~ 2436421 (+)
G299545 NA non-coding downstream 465686 2807788 ~ 2808515 (+)
G299548 NA non-coding downstream 510752 2852854 ~ 2854096 (+)
G299557 NA non-coding downstream 577017 2919119 ~ 2961533 (+)
G299477 NA other upstream 129359 2187333 ~ 2204255 (+)
LOC103047296 NA other upstream 766536 1562838 ~ 1567078 (+)
G299236 NA other upstream 1008760 1324420 ~ 1324854 (+)
G299226 NA other upstream 1115508 1217809 ~ 1218106 (+)
G299046 NA other upstream 1626790 705160 ~ 706824 (+)
LOC103025330 si:ch211-186j3.6,LOC108442966,LOC108259100,LOC106562040,LOC105022727,LOC107696606,LOC107572394,LOC107712488,LOC107680491,LOC107565684 other downstream 56615 2398717 ~ 2927862 (+)
madd madd,LOC107755105 other downstream 2560532 4902634 ~ 5027421 (+)
G299903 NA other downstream 2826524 5168626 ~ 5170108 (+)
LOC111191166 NA other downstream 2911472 5253574 ~ 5256311 (+)
LOC111191164 NA other downstream 3201710 5543812 ~ 5548569 (+)

Expression


Co-expression Network