G299545


Basic Information

Item Value
gene id G299545
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172830.1
NCBI id APWO02000048.1
chromosome length 5891159
location 2807788 ~ 2808515 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU412076
ttggcagacgcttttgtccaaagcgacttacaatagtcaagtacaatgtaaaataagtttaaaggtaaaaacaactttggatagggataaaaggaggtcaaaggggaataataggatagaggagtgaaggagaggaagaaggaaatgaggttagaattagttattgtgttagaggtgttaggagagtaagtgctctttgaagagctctgtcttcaggagtttattaaagatagcgagagattctcctgatctggtagtagaaggtagtttgttccaccattggggaactctgtatgagaacagtctggattgctttgtgtgaatgtttggcaaagcgaggcgacgttcactggaggagcgcagcggccgggaggtagcgtaagccttcaggagcgagtgcaggtaggaaggagctgttctgacatcaccttgtaggcgattgtaagagttttgaatttgatgcgagcatcaactggtagccaatggagctcaatgagcagcggggtgacatgtgcccgtttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU412076 True 522 lncRNA 0.45 2 2807788 2808515

Neighbor

gene id symbol gene type direction distance location
LOC103044644 NA coding upstream 1226852 1579110 ~ 1580936 (+)
LOC111188231 NA coding upstream 1245759 1558494 ~ 1562029 (+)
traf6 traf6 coding upstream 1304808 1492578 ~ 1502980 (+)
LOC103021976 LOC108438545 coding upstream 1378549 1419036 ~ 1429239 (+)
LOC103044962 LOC108259203 coding upstream 1394193 1384340 ~ 1413595 (+)
tshz3 tshz3,tshz3b,LOC108429148,LOC107570485,LOC107556246,LOC107696607 coding downstream 849344 3657859 ~ 3745126 (+)
LOC103030650 nr1h3,LOC107689968,LOC107664377,LOC107755109 coding downstream 2053681 4862196 ~ 4894687 (+)
muc15 NA coding downstream 2323378 5131893 ~ 5144884 (+)
dis3l dis3l,LOC107740444,LOC107663953,LOC107664394,LOC107755103 coding downstream 2338454 5146969 ~ 5167298 (+)
LOC103028443 crybgx,LOC103028443,LOC105906490,LOC103368872,LOC108259467,LOC102304589,LOC102204928 coding downstream 2390283 5198798 ~ 5205566 (+)
G299521 NA non-coding upstream 371367 2434538 ~ 2436421 (+)
G299510 NA non-coding upstream 464446 2342917 ~ 2343342 (+)
G299501 NA non-coding upstream 465686 2333614 ~ 2342102 (+)
G299496 NA non-coding upstream 491886 2315393 ~ 2315902 (+)
G299494 NA non-coding upstream 501653 2300536 ~ 2306135 (+)
G299548 NA non-coding downstream 44339 2852854 ~ 2854096 (+)
G299557 NA non-coding downstream 110604 2919119 ~ 2961533 (+)
G299516 NA non-coding downstream 119660 2928175 ~ 2929067 (+)
G299561 NA non-coding downstream 127543 2936058 ~ 2936439 (+)
G299640 NA non-coding downstream 221049 3029564 ~ 3030986 (+)
G299477 NA other upstream 603533 2187333 ~ 2204255 (+)
LOC103047296 NA other upstream 1240710 1562838 ~ 1567078 (+)
G299236 NA other upstream 1482934 1324420 ~ 1324854 (+)
G299226 NA other upstream 1589682 1217809 ~ 1218106 (+)
G299046 NA other upstream 2100964 705160 ~ 706824 (+)
madd madd,LOC107755105 other downstream 2094119 4902634 ~ 5027421 (+)
G299903 NA other downstream 2360111 5168626 ~ 5170108 (+)
LOC111191166 NA other downstream 2445059 5253574 ~ 5256311 (+)
LOC111191164 NA other downstream 2735297 5543812 ~ 5548569 (+)
LOC111191158 skor1a,LOC108430798,LOC108259147,LOC107563488,LOC107663943,LOC107553092 other downstream 2742578 5551093 ~ 5556428 (+)

Expression


Co-expression Network