G299548


Basic Information

Item Value
gene id G299548
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172830.1
NCBI id APWO02000048.1
chromosome length 5891159
location 2852854 ~ 2854096 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU412079
tcaaattcaaagttgctttattagcatgacaaattttcacatttgtattgccaaagctgtgattaacaaatatatatatattcctgacAAAATTTAACATAAGATAACTGTACAGGTAAATTTGAACACAAGTTTAagtaaacaattaaattaattattataagaaaaaaaaaaaacacatatgatTTATAATAAAGAGTAATAGAGCTTGTAGTTCTGTACAGCAGTGTATCTGTGGTCACTCACTGTCCCTCAGGCTGTGGCAGGCCTGGACGTACTGCGCTGCCAGAGTGCAGCACTCACTGTGTTCCCCCAGCAGGTAGGGGAGTTTTTCTGGATCGGGGATGTTTTTAAATGCAGGTAATTTGTGGGTGAATTTGGTGTAGAATTGGGTTCTAATCTGGGaat
>TU412080
tcaaattcaaagttgctttattagcatgacaaattttcacatttgtattgccaaagctgtgattaacaaatatatatatattcctgacAAAATTTAACATAAGATAACTGTACAGGTAAATTTGAACACAAGTTTAagtaaacaattaaattaattattataagaaaaaaaaaaaacacatatgatTTATAATAAAGAGTAATAGAGCTTGTAGTTCTGTACAGCAGTGTATCTGTGGTCACTCACTGTCCCTCAGGCTGTGGCAGGCCTGGACGTACTGCGCTGCCAGAGTGCAGCACTCACTGTGTTCCCCCAGCAGGTAGGGGAGTTTTTCTGGATCGGGGATGTTTTTAAATGCAGGTAATTTGTGGGTGAATTTGGTGTAGAATTGGGTTCTAATCTGGGaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU412079 True 408 lncRNA 0.36 2 2852854 2854096
TU412080 False 408 lncRNA 0.36 2 2852854 2854096

Neighbor

gene id symbol gene type direction distance location
LOC103044644 NA coding upstream 1271918 1579110 ~ 1580936 (+)
LOC111188231 NA coding upstream 1290825 1558494 ~ 1562029 (+)
traf6 traf6 coding upstream 1349874 1492578 ~ 1502980 (+)
LOC103021976 LOC108438545 coding upstream 1423615 1419036 ~ 1429239 (+)
LOC103044962 LOC108259203 coding upstream 1439259 1384340 ~ 1413595 (+)
tshz3 tshz3,tshz3b,LOC108429148,LOC107570485,LOC107556246,LOC107696607 coding downstream 803763 3657859 ~ 3745126 (+)
LOC103030650 nr1h3,LOC107689968,LOC107664377,LOC107755109 coding downstream 2008100 4862196 ~ 4894687 (+)
muc15 NA coding downstream 2277797 5131893 ~ 5144884 (+)
dis3l dis3l,LOC107740444,LOC107663953,LOC107664394,LOC107755103 coding downstream 2292873 5146969 ~ 5167298 (+)
LOC103028443 crybgx,LOC103028443,LOC105906490,LOC103368872,LOC108259467,LOC102304589,LOC102204928 coding downstream 2344702 5198798 ~ 5205566 (+)
G299545 NA non-coding upstream 44339 2807788 ~ 2808515 (+)
G299521 NA non-coding upstream 416433 2434538 ~ 2436421 (+)
G299510 NA non-coding upstream 509512 2342917 ~ 2343342 (+)
G299501 NA non-coding upstream 510752 2333614 ~ 2342102 (+)
G299496 NA non-coding upstream 536952 2315393 ~ 2315902 (+)
G299557 NA non-coding downstream 65023 2919119 ~ 2961533 (+)
G299516 NA non-coding downstream 74079 2928175 ~ 2929067 (+)
G299561 NA non-coding downstream 81962 2936058 ~ 2936439 (+)
G299640 NA non-coding downstream 175468 3029564 ~ 3030986 (+)
G299641 NA non-coding downstream 208725 3062821 ~ 3063122 (+)
G299477 NA other upstream 648599 2187333 ~ 2204255 (+)
LOC103047296 NA other upstream 1285776 1562838 ~ 1567078 (+)
G299236 NA other upstream 1528000 1324420 ~ 1324854 (+)
G299226 NA other upstream 1634748 1217809 ~ 1218106 (+)
G299046 NA other upstream 2146030 705160 ~ 706824 (+)
madd madd,LOC107755105 other downstream 2048538 4902634 ~ 5027421 (+)
G299903 NA other downstream 2314530 5168626 ~ 5170108 (+)
LOC111191166 NA other downstream 2399478 5253574 ~ 5256311 (+)
LOC111191164 NA other downstream 2689716 5543812 ~ 5548569 (+)
LOC111191158 skor1a,LOC108430798,LOC108259147,LOC107563488,LOC107663943,LOC107553092 other downstream 2696997 5551093 ~ 5556428 (+)

Expression


Co-expression Network