G299557


Basic Information

Item Value
gene id G299557
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172830.1
NCBI id APWO02000048.1
chromosome length 5891159
location 2919119 ~ 2961533 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU412089
TAAAAGTTTATTaacaacactgtttatacaccaTGTAGTTTTTACCTAGCTtactaaaaacactgttttcacacacaaaTGGTATCTTCAGGtagtttaaaacacagtttatgcACAGGGTACCATTAAAACCACTAAAAAGCTCTATATTTAGGAATACTTGTGGTGAACTAaagtgggctattcaacaagagtttgtactctttatcatgtttcactacaaccacAAGAGTCCAGTCCGTGGTGGTCTTCTTAAAGGTGGTGAATCTACCTGAGCACTagtgatttttttaagaatagcaTGCCACCAGGTGTTAGCAACACTTAGGAAGGGCACCGGTGTCCTTATACAAGCCCACCACCAACGTCCAGCTGTGGTCACCGTAACCGCTCTTCAGACGAGGGTCCTGTCTCCACAGCAACCTTTAACATCAGCAGCCCACCATCTCCCATTTTCCTAACAAACGAGAAACTGGGAGACATTTTCGAGACGATTGTGACAGCTTGACATTTTGCCCCTGACATTTCACAGAAAGGAAAACCTCTGGGGAAGGAAGTTTCTCATCTGCTGCTTCCAAAGGTGGGAGGAAGAAGGGAATAAGGGAATAGGGTGGTGGCAATTTCTGGAGAAGAAAAACAGGAAGCTGTACCAGCAGGAGGTAGTTTAGGAAATTTCAGCGTTCTTTGTAGTGACGAAACTAACCGTGTTTGATGGCGTCGCAAATTCAAAAAGTGTATTTTCGGATAGAGAGAGGTGAAGAACGGTAttggtagagggaggtagaagtattgagaaagagagagagagagagagagacagaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU412089 True 823 lncRNA 0.43 3 2919119 2961533

Neighbor

gene id symbol gene type direction distance location
LOC103044644 NA coding upstream 1338183 1579110 ~ 1580936 (+)
LOC111188231 NA coding upstream 1357090 1558494 ~ 1562029 (+)
traf6 traf6 coding upstream 1416139 1492578 ~ 1502980 (+)
LOC103021976 LOC108438545 coding upstream 1489880 1419036 ~ 1429239 (+)
LOC103044962 LOC108259203 coding upstream 1505524 1384340 ~ 1413595 (+)
tshz3 tshz3,tshz3b,LOC108429148,LOC107570485,LOC107556246,LOC107696607 coding downstream 696326 3657859 ~ 3745126 (+)
LOC103030650 nr1h3,LOC107689968,LOC107664377,LOC107755109 coding downstream 1900663 4862196 ~ 4894687 (+)
muc15 NA coding downstream 2170360 5131893 ~ 5144884 (+)
dis3l dis3l,LOC107740444,LOC107663953,LOC107664394,LOC107755103 coding downstream 2185436 5146969 ~ 5167298 (+)
LOC103028443 crybgx,LOC103028443,LOC105906490,LOC103368872,LOC108259467,LOC102304589,LOC102204928 coding downstream 2237265 5198798 ~ 5205566 (+)
G299548 NA non-coding upstream 65023 2852854 ~ 2854096 (+)
G299545 NA non-coding upstream 110604 2807788 ~ 2808515 (+)
G299521 NA non-coding upstream 482698 2434538 ~ 2436421 (+)
G299510 NA non-coding upstream 575777 2342917 ~ 2343342 (+)
G299501 NA non-coding upstream 577017 2333614 ~ 2342102 (+)
G299640 NA non-coding downstream 68031 3029564 ~ 3030986 (+)
G299641 NA non-coding downstream 101288 3062821 ~ 3063122 (+)
G299669 NA non-coding downstream 238412 3199945 ~ 3200191 (+)
G299670 NA non-coding downstream 267086 3228619 ~ 3229010 (+)
G299679 NA non-coding downstream 398756 3360289 ~ 3360553 (+)
G299477 NA other upstream 714864 2187333 ~ 2204255 (+)
LOC103047296 NA other upstream 1352041 1562838 ~ 1567078 (+)
G299236 NA other upstream 1594265 1324420 ~ 1324854 (+)
G299226 NA other upstream 1701013 1217809 ~ 1218106 (+)
G299046 NA other upstream 2212295 705160 ~ 706824 (+)
madd madd,LOC107755105 other downstream 1941101 4902634 ~ 5027421 (+)
G299903 NA other downstream 2207093 5168626 ~ 5170108 (+)
LOC111191166 NA other downstream 2292041 5253574 ~ 5256311 (+)
LOC111191164 NA other downstream 2582279 5543812 ~ 5548569 (+)
LOC111191158 skor1a,LOC108430798,LOC108259147,LOC107563488,LOC107663943,LOC107553092 other downstream 2589560 5551093 ~ 5556428 (+)

Expression


Co-expression Network