G299640


Basic Information

Item Value
gene id G299640
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172830.1
NCBI id APWO02000048.1
chromosome length 5891159
location 3029564 ~ 3030986 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU412178
TTTACCTGGCGTGCAAAATAAAAGCACACTCCGAGTCTTTTAATTAAAGCCGTCTACTGAAGGCATGTGCGACTCGTCCTCATCAGCGGGTGAAAGAAACACTTCCAGCCATAGCGGCTGCTTTTCTGAGGAGACGGAGAGAAGAAGGGATTTAAAAaACTCTTCTAGGTCGAGCTCTCCCACTAACAAAAACTCTGAGTCTCTCCCAGCAGGATGTTCTGAAGAGAGAACTGGAGACATATATGCTTCAGACTCTTCTAGGTCGAGCTCTCCCACTAACAAAGACTCAGAGTCTCTCCCAGCAGGATGTCCTGGAAAGAGAACTGGAGACGTATACACTTCATGTAAGGgttttgtatatatgtgtatatatatgaatatattatatactggcTCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU412178 True 397 lncRNA 0.44 3 3029564 3030986

Neighbor

gene id symbol gene type direction distance location
LOC103044644 NA coding upstream 1448628 1579110 ~ 1580936 (+)
LOC111188231 NA coding upstream 1467535 1558494 ~ 1562029 (+)
traf6 traf6 coding upstream 1526584 1492578 ~ 1502980 (+)
LOC103021976 LOC108438545 coding upstream 1600325 1419036 ~ 1429239 (+)
LOC103044962 LOC108259203 coding upstream 1615969 1384340 ~ 1413595 (+)
tshz3 tshz3,tshz3b,LOC108429148,LOC107570485,LOC107556246,LOC107696607 coding downstream 626873 3657859 ~ 3745126 (+)
LOC103030650 nr1h3,LOC107689968,LOC107664377,LOC107755109 coding downstream 1831210 4862196 ~ 4894687 (+)
muc15 NA coding downstream 2100907 5131893 ~ 5144884 (+)
dis3l dis3l,LOC107740444,LOC107663953,LOC107664394,LOC107755103 coding downstream 2115983 5146969 ~ 5167298 (+)
LOC103028443 crybgx,LOC103028443,LOC105906490,LOC103368872,LOC108259467,LOC102304589,LOC102204928 coding downstream 2167812 5198798 ~ 5205566 (+)
G299557 NA non-coding upstream 68031 2919119 ~ 2961533 (+)
G299561 NA non-coding upstream 93125 2936058 ~ 2936439 (+)
G299516 NA non-coding upstream 100497 2928175 ~ 2929067 (+)
G299548 NA non-coding upstream 175468 2852854 ~ 2854096 (+)
G299545 NA non-coding upstream 221049 2807788 ~ 2808515 (+)
G299641 NA non-coding downstream 31835 3062821 ~ 3063122 (+)
G299669 NA non-coding downstream 168959 3199945 ~ 3200191 (+)
G299670 NA non-coding downstream 197633 3228619 ~ 3229010 (+)
G299679 NA non-coding downstream 329303 3360289 ~ 3360553 (+)
G299685 NA non-coding downstream 364645 3395631 ~ 3396080 (+)
LOC103025330 si:ch211-186j3.6,LOC108442966,LOC108259100,LOC106562040,LOC105022727,LOC107696606,LOC107572394,LOC107712488,LOC107680491,LOC107565684 other upstream 101702 2398717 ~ 2927862 (+)
G299477 NA other upstream 825309 2187333 ~ 2204255 (+)
LOC103047296 NA other upstream 1462486 1562838 ~ 1567078 (+)
G299236 NA other upstream 1704710 1324420 ~ 1324854 (+)
G299226 NA other upstream 1811458 1217809 ~ 1218106 (+)
madd madd,LOC107755105 other downstream 1871648 4902634 ~ 5027421 (+)
G299903 NA other downstream 2137640 5168626 ~ 5170108 (+)
LOC111191166 NA other downstream 2222588 5253574 ~ 5256311 (+)
LOC111191164 NA other downstream 2512826 5543812 ~ 5548569 (+)
LOC111191158 skor1a,LOC108430798,LOC108259147,LOC107563488,LOC107663943,LOC107553092 other downstream 2520107 5551093 ~ 5556428 (+)

Expression


Co-expression Network