G299700


Basic Information

Item Value
gene id G299700
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172830.1
NCBI id APWO02000048.1
chromosome length 5891159
location 3557431 ~ 3557840 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU412251
tgtcacatcctggtctcgtctcgtgtctgtgtgtcttccccacgtgacctgtgctcccctgtgtctcctgtctcagtacttttccacctgtgtctcatttgtagctccgccccttccccaggtgtttctaattatagtgtttcctgtttctttaaatagccctcgtctaccactttgtctccgtcggtctttgcaccctcccctgttgttttgtctctctgtgcttcGTAGTTTCTCCGtttttcatagcctctgttccttgttattttccctgtttattgccctgctcagtttagtcttcctagtcctgtttatttctagtttcccttgttattctcttgtatataccctgctttgtgtttattttctagttttgctccttatatatattccctgtttgtttatcatta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU412251 True 410 lncRNA 0.43 1 3557431 3557840

Neighbor

gene id symbol gene type direction distance location
LOC103044644 NA coding upstream 1976495 1579110 ~ 1580936 (+)
LOC111188231 NA coding upstream 1995402 1558494 ~ 1562029 (+)
traf6 traf6 coding upstream 2054451 1492578 ~ 1502980 (+)
LOC103021976 LOC108438545 coding upstream 2128192 1419036 ~ 1429239 (+)
LOC103044962 LOC108259203 coding upstream 2143836 1384340 ~ 1413595 (+)
tshz3 tshz3,tshz3b,LOC108429148,LOC107570485,LOC107556246,LOC107696607 coding downstream 100019 3657859 ~ 3745126 (+)
LOC103030650 nr1h3,LOC107689968,LOC107664377,LOC107755109 coding downstream 1304356 4862196 ~ 4894687 (+)
muc15 NA coding downstream 1574053 5131893 ~ 5144884 (+)
dis3l dis3l,LOC107740444,LOC107663953,LOC107664394,LOC107755103 coding downstream 1589129 5146969 ~ 5167298 (+)
LOC103028443 crybgx,LOC103028443,LOC105906490,LOC103368872,LOC108259467,LOC102304589,LOC102204928 coding downstream 1640958 5198798 ~ 5205566 (+)
G299694 NA non-coding upstream 16397 3540335 ~ 3541034 (+)
G299685 NA non-coding upstream 161351 3395631 ~ 3396080 (+)
G299679 NA non-coding upstream 196878 3360289 ~ 3360553 (+)
G299670 NA non-coding upstream 328421 3228619 ~ 3229010 (+)
G299669 NA non-coding upstream 357240 3199945 ~ 3200191 (+)
G299712 NA non-coding downstream 139264 3697104 ~ 3705830 (+)
G299744 NA non-coding downstream 231424 3789264 ~ 3789471 (+)
G299749 NA non-coding downstream 300742 3858582 ~ 3858996 (+)
G299765 NA non-coding downstream 445981 4003821 ~ 4160582 (+)
G299774 NA non-coding downstream 569402 4127242 ~ 4203962 (+)
LOC103025330 si:ch211-186j3.6,LOC108442966,LOC108259100,LOC106562040,LOC105022727,LOC107696606,LOC107572394,LOC107712488,LOC107680491,LOC107565684 other upstream 629569 2398717 ~ 2927862 (+)
G299477 NA other upstream 1353176 2187333 ~ 2204255 (+)
LOC103047296 NA other upstream 1990353 1562838 ~ 1567078 (+)
G299236 NA other upstream 2232577 1324420 ~ 1324854 (+)
G299226 NA other upstream 2339325 1217809 ~ 1218106 (+)
madd madd,LOC107755105 other downstream 1344794 4902634 ~ 5027421 (+)
G299903 NA other downstream 1610786 5168626 ~ 5170108 (+)
LOC111191166 NA other downstream 1695734 5253574 ~ 5256311 (+)
LOC111191164 NA other downstream 1985972 5543812 ~ 5548569 (+)
LOC111191158 skor1a,LOC108430798,LOC108259147,LOC107563488,LOC107663943,LOC107553092 other downstream 1993253 5551093 ~ 5556428 (+)

Expression


Co-expression Network