G299765


Basic Information

Item Value
gene id G299765
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172830.1
NCBI id APWO02000048.1
chromosome length 5891159
location 4003821 ~ 4160582 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU412343
gggacataccagagttcaaaagaggacaaattgttggtgcacgtcttgctggcgcatctgtgaccaagacagcaagtctttgtgatgcatcaagagccacgctatccagggtaatgtcatcataccaccaagaaggaccaaccacatccaacaggattaactgtggacgctgtaagaggaagctgtctgaaagggatgttcgggtgctaacccagattgtatccaaaaaacataaaaccacggctgatcaaatcacgcagaattcaatgtgcacctcaactctcctgtttccaccagaactgtccgtcaccacaataaattattgtgctctaaaaccaggtgtttcagtttcattgtccaaaccctgtactttacagctctgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
>TU412344
gggagacataccagagttcaaaagaggacaaattgttggtgcacgttttgctggcgcatctgtgaccaagacagcaagtctttgtgatgcatcaagagccacggtatccagggtaacgtcagcataccaccaagaaggaccaaccacatccaacaggattaactgtggacgctttaagaggaagctgtctgaaagggatgttcgggtgctaacccggattgtatccaaaaaaacataaaaccacggctgatcaaatcacggcagaattcaatgtgcacctcaactctcctgtttccaccagaactgtccgtcaccacaataaattattgtgctctaaaaccaggtgtttcagtttcattgtccaacccctgtatatta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU412343 True 412 lncRNA 0.42 2 4003821 4103810
TU412344 False 378 lncRNA 0.46 2 4103395 4160582

Neighbor

gene id symbol gene type direction distance location
tshz3 tshz3,tshz3b,LOC108429148,LOC107570485,LOC107556246,LOC107696607 coding upstream 258695 3657859 ~ 3745126 (+)
LOC103044644 NA coding upstream 2422885 1579110 ~ 1580936 (+)
LOC111188231 NA coding upstream 2441792 1558494 ~ 1562029 (+)
traf6 traf6 coding upstream 2500841 1492578 ~ 1502980 (+)
LOC103021976 LOC108438545 coding upstream 2574582 1419036 ~ 1429239 (+)
LOC103030650 nr1h3,LOC107689968,LOC107664377,LOC107755109 coding downstream 701614 4862196 ~ 4894687 (+)
muc15 NA coding downstream 971311 5131893 ~ 5144884 (+)
dis3l dis3l,LOC107740444,LOC107663953,LOC107664394,LOC107755103 coding downstream 986387 5146969 ~ 5167298 (+)
LOC103028443 crybgx,LOC103028443,LOC105906490,LOC103368872,LOC108259467,LOC102304589,LOC102204928 coding downstream 1038216 5198798 ~ 5205566 (+)
LOC103027811 smad3,smad3a,LOC108430827,LOC103353199,LOC107740443,LOC107553101 coding downstream 1166935 5327517 ~ 5373340 (+)
G299749 NA non-coding upstream 144825 3858582 ~ 3858996 (+)
G299744 NA non-coding upstream 214350 3789264 ~ 3789471 (+)
G299712 NA non-coding upstream 297991 3697104 ~ 3705830 (+)
G299700 NA non-coding upstream 445981 3557431 ~ 3557840 (+)
G299694 NA non-coding upstream 462787 3540335 ~ 3541034 (+)
G299856 NA non-coding downstream 420570 4581152 ~ 4581412 (+)
G299863 NA non-coding downstream 517926 4678508 ~ 4678831 (+)
G299872 NA non-coding downstream 658173 4818755 ~ 4900284 (+)
G299885 NA non-coding downstream 758519 4919101 ~ 4920975 (+)
G299886 NA non-coding downstream 810481 4971063 ~ 4971673 (+)
LOC103025330 si:ch211-186j3.6,LOC108442966,LOC108259100,LOC106562040,LOC105022727,LOC107696606,LOC107572394,LOC107712488,LOC107680491,LOC107565684 other upstream 1075959 2398717 ~ 2927862 (+)
G299477 NA other upstream 1799566 2187333 ~ 2204255 (+)
LOC103047296 NA other upstream 2436743 1562838 ~ 1567078 (+)
G299236 NA other upstream 2678967 1324420 ~ 1324854 (+)
G299226 NA other upstream 2785715 1217809 ~ 1218106 (+)
madd madd,LOC107755105 other downstream 742052 4902634 ~ 5027421 (+)
G299903 NA other downstream 1008044 5168626 ~ 5170108 (+)
LOC111191166 NA other downstream 1092992 5253574 ~ 5256311 (+)
LOC111191164 NA other downstream 1383230 5543812 ~ 5548569 (+)
LOC111191158 skor1a,LOC108430798,LOC108259147,LOC107563488,LOC107663943,LOC107553092 other downstream 1390511 5551093 ~ 5556428 (+)

Expression


Co-expression Network