G299901


Basic Information

Item Value
gene id G299901
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172830.1
NCBI id APWO02000048.1
chromosome length 5891159
location 5125958 ~ 5209533 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU412517
aaattgaaaacctctggaatataatcaagaggaagatggatgatcacaaaccatcaaaccaaactgaactgcttaaatttttgcaccaggagtaaagcagcataaatttatctaaaagcactgtgtaagactggtggaggaggagaacatgatgccacaatgcatgaaaactgtgattaaaaaccagggttattccaccaaatattgattatttctgaactcttaaaactttatgaatatgaacttgttttctttgcattattcaagtctgaaagctctgtatcttttttgttattttagccatttcttattttctgcaaataaatgctctaaatggcaatatttttatttggaatttgggagaaatgttgtctgtagtttatagaataaaacaacaatgttaattcaTTTATATAATGAGTTTACGGTTATTCAATGCAGATCATAGATAATAACACTGGAGCactcaaacaataaaataaacaaaaaagttttcaAAAGAAAATaaaaatggaa

Function

GO:

id name namespace
GO:0005198 structural molecule activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU412517 True 516 lncRNA 0.30 3 5125958 5209533

Neighbor

gene id symbol gene type direction distance location
LOC103030650 nr1h3,LOC107689968,LOC107664377,LOC107755109 coding upstream 231271 4862196 ~ 4894687 (+)
tshz3 tshz3,tshz3b,LOC108429148,LOC107570485,LOC107556246,LOC107696607 coding upstream 1380832 3657859 ~ 3745126 (+)
LOC103044644 NA coding upstream 3545022 1579110 ~ 1580936 (+)
LOC111188231 NA coding upstream 3563929 1558494 ~ 1562029 (+)
traf6 traf6 coding upstream 3622978 1492578 ~ 1502980 (+)
LOC103027811 smad3,smad3a,LOC108430827,LOC103353199,LOC107740443,LOC107553101 coding downstream 117984 5327517 ~ 5373340 (+)
map2k5 map2k5 coding downstream 232007 5441540 ~ 5533366 (+)
LOC103026906 pias1a,pias1b,LOC108430823,LOC108259600,LOC107553093 coding downstream 354726 5564259 ~ 5652806 (+)
LOC103026610 LOC103026610,LOC108430825 coding downstream 450065 5659598 ~ 5660875 (+)
LOC103042267 LOC108430822 coding downstream 480253 5689786 ~ 5814523 (+)
G299896 NA non-coding upstream 58336 5066097 ~ 5067622 (+)
G299886 NA non-coding upstream 154285 4971063 ~ 4971673 (+)
G299885 NA non-coding upstream 204983 4919101 ~ 4920975 (+)
G299872 NA non-coding upstream 225674 4818755 ~ 4900284 (+)
G299863 NA non-coding upstream 447127 4678508 ~ 4678831 (+)
G299912 NA non-coding downstream 1189 5210722 ~ 5248094 (+)
G299918 NA non-coding downstream 39685 5249218 ~ 5249612 (+)
LOC111191167 NA non-coding downstream 41489 5251022 ~ 5251412 (+)
G299925 NA non-coding downstream 161417 5370950 ~ 5378087 (+)
G299934 NA non-coding downstream 266527 5476060 ~ 5508588 (+)
madd madd,LOC107755105 other upstream 98537 4902634 ~ 5027421 (+)
LOC103025330 si:ch211-186j3.6,LOC108442966,LOC108259100,LOC106562040,LOC105022727,LOC107696606,LOC107572394,LOC107712488,LOC107680491,LOC107565684 other upstream 2198096 2398717 ~ 2927862 (+)
G299477 NA other upstream 2921703 2187333 ~ 2204255 (+)
LOC103047296 NA other upstream 3558880 1562838 ~ 1567078 (+)
G299236 NA other upstream 3801104 1324420 ~ 1324854 (+)
LOC111191166 NA other downstream 44041 5253574 ~ 5256311 (+)
LOC111191164 NA other downstream 334279 5543812 ~ 5548569 (+)
LOC111191158 skor1a,LOC108430798,LOC108259147,LOC107563488,LOC107663943,LOC107553092 other downstream 341560 5551093 ~ 5556428 (+)

Expression


Co-expression Network