LOC111191166


Basic Information

Item Value
gene id LOC111191166
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172830.1
NCBI id APWO02000048.1
chromosome length 5891159
location 5253574 ~ 5256311 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU412555
AAGCAAGGTAACTTCAGGCCGAAGATGAGAATTGTCCAAAGCAAATGTGCCTCAGCTCTTTGAATTTGAGCTTAGGTTATCATAAGAAGtgccaaaatgttttaatattatacatAGGATTTTGTGAGATTTGCAGAATTACTGGACAAATGATTTTGTTGCTCTTGGTGTGCAGGTATCCTACCAATGCAGAGTATGTTCAGGTTGCCAAAGCTTTGATTGTGAAGTACCCTTTCTTGAAGGATGTTGAGGGGAATGGTTATGTAAGtttgcatgtttatttatttatttacaaaatagttAGTTCTGTTCACAGAAGTATCTgatgtaatattgttaatttgGTGTGTAATATTAGATTTATTGGTGGTGGTGTTGCAATTGCTGAAAGTACGCATGTTTTGACTTGTTCATCAAAAGCATACCTGGCATATGTCACTTAAGAGGAAGTTCAAGGCAGAACGGGCGCCACTTCTCAACGACACCGAGGTCAAAAAGTTTAAAGAGAAGTTTCACCAAGCAAGGAAGTCAACAGATGGACCTGAAAACTTTGCATGTCAAGCGTACTAAGACATTTGTGGTAAGTATCTCTTAGGCAaaggaaaaatgtaagtatttactTTTTGGTTATGAAATGATTACTTGTGTCTCTGATAAAGGAATCATGCATTGTTGGAGAGGATGCTACATCTGTTGAGGCCCATGTCAAGGCATTGCATGAACAGTACAGGAAGACACAACCTGATTTGGCGATCGTGAAGGACCGCATGAAAAAGACATTTGCATGGCGTCGTCGAGAAATATCAGAGGGAATGACCGttacaaacatcttgatgaaaTACCCGTTCTTAAGAACATCCTCAGGGTTGTATGACGAGGTTGATGCCATCCATCCTTTGACGGTGAACATTTGTCGTCGCTTCAACGAGGGATTTACAGCTTTACTCCCTAATTTGCTGAAACTTGTCAAGGGGACGTTGCCACTAAAAAAACTGTATGTGGAGGCGAGAGAGGAAGCTCTGGCTGAGGACCTTCCAGGTTGTGATTTTTGACCCAAATGTAGAATTATTACATCAGTGGGTGGCTTTTGTCCTCGTGCTGAGTTCTTATTAAAGCACTTATGTTCTTCACATAACAGGCATTGACTTCAGGGGTGgacttgtttttttgccatcCATCTTCAGGGAGAACATTGACCACCTCATTTCACTTGGAGAGGGTGAACCTGCCACGCCGTATCCTACAATTCAGCTGAAAGACAAGGATTGGAAAACTGCCATTTCTAGACGAAGTCAGAGTGTGGTGAAGGTTGATGGAGTTGAGGTGTGCACTTGTGCTGCGATAGATGAGGCCTTCATCACAACCTTTTGTATGTATTTCACCTTCAACATTGCATACCCTCCACGGCTGAGAAATACCATGACATTTCTCCAGAGGTGCATTCTACACATCAAGGAGGAAGGAGACAAGCCATTGCCAGTAACTGTGACACGAGTGATGAATCTTCTGTAGATCTATGGCTCCACTGCACCAATGCCCAAAATGCCCACGTAGAACTTTCACCCTTGTAAAGCTTATACAACACATTGGACTTGTACATGCACACAAAGCTCACTTTAGCATTACTTGTGGTATAAATGATTGCTGTTCTACTTTTTCCAAGTACCATTCTTACAGAAGACACGTGtacagaaaacacaaacacagtgtttttcctTCCCCTGGGAGCAACGAAGAAGTTAATGAAGAATCAGTAGTGGAACAAGACAACACTTTTGATGCAGATTTAACCCAGCAGTCTACCCCACCAAGTATTGATAAACTGCTTGAAAATTTAAGGGAGAACCTTTTTGGCTTTATTCTAAAATGCAGGGAAAAAAACCACCTTCC
>XM_022665285.1
TGCATGTCAAGCGTACTAAGACATTTGTGGAATCATGCATTGTTGGAGAGGATGCTACATCTGTTGAGGCCCATGTCAAGGCATTGCATGAACAGTACAGGAAGACACAACCTGATTTGGCGATCGTGAAGGACCGCATGAAAAAGACATTTGCATGGCGTCGTCGAGAAATATCAGAGGGAATGACCGttacaaacatcttgatgaaaTACCCGTTCTTAAGAACATCCTCAGGGTTGTATGACGAGGTTGATGCCATCCATCCTTTGACGGTGAACATTTGTCGTCGCTTCAACGAGGGATTTACAGCTTTACTCCCTAATTTGCTGAAACTTGTCAAGGGGACGTTGCCACTAAAAAAACTGTATGTGGAGGCGAGAGAGGAAGCTCTGGCTGAGGACCTTCCAGGCATTGACTTCAGGGGTGgacttgtttttttgccatcCATCTTCAGGGAGAACATTGACCACCTCATTTCACTTGGAGAGGGTGAACCTGCCACGCCGTATCCTACAATTCAGCTGAAAGACAAGGATTGGAAAACTGCCATTTCTAGACGAAGTCAGAGTGTGGTGAAGGTTGATGGAGTTGAGGTGTGCACTTGTGCTGCGATAGATGAGGCCTTCATCACAACCTTTTGTATGTATTTCACCTTCAACATTGCATACCCTCCACGGCTGAGAAATACCATGACATTTCTCCAGAGGTGCATTCTACACATCAAGGAGGAAGGAGACAAGCCATTGCCAGTAACTGTGACACGAGTGATGAATCTTCTGTAGATCTATGGCTCCACTGCACCAATGCCCAAAATGCCCACGTAGAACTTTCACCCTTGTAAAGCTTATACAACACATTGGACTTGTACATGCACACAAAGCTCACTTTAGCATTACTTGTGGTATAAATGATTGCTGTTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU412555 True 1890 lncRNA 0.41 3 5253574 5256311
XM_022665285.1 False 920 mRNA 0.45 5 5254125 5256071

Neighbor

gene id symbol gene type direction distance location
LOC103028443 crybgx,LOC103028443,LOC105906490,LOC103368872,LOC108259467,LOC102304589,LOC102204928 coding upstream 48008 5198798 ~ 5205566 (+)
dis3l dis3l,LOC107740444,LOC107663953,LOC107664394,LOC107755103 coding upstream 86276 5146969 ~ 5167298 (+)
muc15 NA coding upstream 108690 5131893 ~ 5144884 (+)
LOC103030650 nr1h3,LOC107689968,LOC107664377,LOC107755109 coding upstream 358887 4862196 ~ 4894687 (+)
tshz3 tshz3,tshz3b,LOC108429148,LOC107570485,LOC107556246,LOC107696607 coding upstream 1508448 3657859 ~ 3745126 (+)
LOC103027811 smad3,smad3a,LOC108430827,LOC103353199,LOC107740443,LOC107553101 coding downstream 71206 5327517 ~ 5373340 (+)
map2k5 map2k5 coding downstream 185229 5441540 ~ 5533366 (+)
LOC103026906 pias1a,pias1b,LOC108430823,LOC108259600,LOC107553093 coding downstream 307948 5564259 ~ 5652806 (+)
LOC103026610 LOC103026610,LOC108430825 coding downstream 403287 5659598 ~ 5660875 (+)
LOC103042267 LOC108430822 coding downstream 433475 5689786 ~ 5814523 (+)
LOC111191167 NA non-coding upstream 2162 5251022 ~ 5251412 (+)
G299918 NA non-coding upstream 3962 5249218 ~ 5249612 (+)
G299912 NA non-coding upstream 5480 5210722 ~ 5248094 (+)
G299901 NA non-coding upstream 44041 5125958 ~ 5209533 (+)
G299896 NA non-coding upstream 185952 5066097 ~ 5067622 (+)
G299925 NA non-coding downstream 114639 5370950 ~ 5378087 (+)
G299934 NA non-coding downstream 219749 5476060 ~ 5508588 (+)
G299932 NA non-coding downstream 265201 5521512 ~ 5535585 (+)
G299938 NA non-coding downstream 266924 5523235 ~ 5524082 (+)
G299946 NA non-coding downstream 321752 5578063 ~ 5579719 (+)
G299903 NA other upstream 83466 5168626 ~ 5170108 (+)
madd madd,LOC107755105 other upstream 226153 4902634 ~ 5027421 (+)
LOC103025330 si:ch211-186j3.6,LOC108442966,LOC108259100,LOC106562040,LOC105022727,LOC107696606,LOC107572394,LOC107712488,LOC107680491,LOC107565684 other upstream 2325712 2398717 ~ 2927862 (+)
G299477 NA other upstream 3049319 2187333 ~ 2204255 (+)
LOC103047296 NA other upstream 3686496 1562838 ~ 1567078 (+)
LOC111191164 NA other downstream 287501 5543812 ~ 5548569 (+)
LOC111191158 skor1a,LOC108430798,LOC108259147,LOC107563488,LOC107663943,LOC107553092 other downstream 294782 5551093 ~ 5556428 (+)

Expression


Co-expression Network