G299925


Basic Information

Item Value
gene id G299925
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172830.1
NCBI id APWO02000048.1
chromosome length 5891159
location 5370950 ~ 5378087 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU412563
atgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgcgtgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtaagagagaaggTTTTCCTAAGATGTGCTTATGGTTGCAGTTTAATCTGTCCAGCCCAGCTGTCtctgatgtgtgtgtttatgtactgtatgtgtgtgtgagtgtatgattgctgtgtgtgtgtgtgtctgtgtgtgtatgcccACCTATTGAGTTCAAATAGGCGTATCTGCAAGAAAAAACAGGCCTCATTCAGGTATGGAAGCTTTTTTTCCAGGCTTAAGCTTTTGTGCATTGTCCTGATTTTACTGCATCATTTTGTTCGCAGTCTCTTGGgctgcgttcacattaccagactaaaagtgacccaaatctgattaaaatctGATTAACTGTGCCATAATTTACATTAGAAACTAAAATGAAACCTCCTCGAGTGCCTCCATACTTAAGAAAAGCTGCATAAACTCATTTTCCACTGTATTTTCCATTCACATCTGTTTAAACAAGGGACAGAGTAaagcaaaataatctgaaaagaaggttaaactacattttttaaagtgaattttaaattgctggttcgaatcccggtcatgcaacTTGCTACTCTACTATAAATGCTGTTTCAGGgacaaatacagtaCCGATCTAAAGAAACAAATTGGAATTGATGGCCTGTGTGAACATCTTAAAAATCCTAGATCAGAAACTCATTTCATTTGTGGGCATGCAACATAAATGTGAGTGTTCAGATTTGATATTTAATCAGTAAATCAGAATTGGTGGCTTGTGTGGCCTTAGattggatatacagctctggaaaacaattaagagatcacttcagtttctgaatcagtttctctaattttgctatttataggtatatatttgagtaaaatgaacattgttgttttattctataaactacagacaacatttctcccaaattccaaataaaatattgtcatttagagcatttatttacagaatatgagaaatggctgaaatagttcatcttcataaagttttaagagttcataaatcaatatttgctggaataacccttggtggtttttaatcacaggtttcatacatcttggcatcatgttctcctccaccagtcttacacactgcttttggataactttatgctgctttactcctggtgcaaaaattcaagcagttcagtttggtggtttgatggcttgtgatcctccatcttcctcttgattatattccagagttttttttattcaatttttaagtggtctcttatttttttcccaaagcttTTTATCTGATTTGTTGCACACAACATGAATATGAGCGGTCTTTTTGCAGCTTTTTGCAATCTTGTATTAAATCTTTTATTGAATCAATCATGATTGAGATAataagtagtaaaaaaaaagccaaatcaTATGTGTTTAGATCAAATCATATGTGTTTTTGCCTGTGCATacccaaatttaaaaaattggaATTGAGGGCATGTGTAGACATATCAAATTTGATCTTTTTCAAATTAACTTTGATTCACTTATGTGTGTTCTAGATTAGATACACGCGTTTCATTCATGCTCAGcgtgcaacatgaatgtgaatactcTTGAATTAATCAggattgtaatgtgaacaaagctTTTGTGAAGACTGTAGACAGTTGAATGGGCATTACTTTTACCAGAATAGCGGGCATTCAGATATTAATTGCGCAGTTCATCTCAGATTGCTTTTCGTAAAATTGTGATTTTGCTGTTGTAAATTATATTATGCTGTTGTGATATTATAGGAAAGCTTCAAATCAGCCAGTTTCATTGTACAGTTAAACATATCCTAAAGTTTAGGTACAGTttggctgtgttcagactgcaggtaaatcagatttatttctCAGCTCTGTCTGCACTGTTATTTGCGAGTGATCAGATCGGATTTGCCTGTCTGAACATCACAAatgtatctgcatgggttgctgtggtattgagCCTGGTTTCAGTGATGCAAAAGATACGTTGAGACACATCTTTACAAATCCaattaaaatcacataaaaCCACCTCCAAATTATTAATTCACAcattaaattcagtggtttaatttaattttcattattttaaaatgttctgcattgtagattaagaCTAAAGTTATCAAAACTATAAAAGagtgctaaacaaaccagaatatgttttatattttaaattctgcttagatgacagctttggctggattttctcagtcagctttatgaggtagagtcacctggaattcaggctttcagtgaacagctgtgct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU412563 True 2316 lncRNA 0.35 4 5370950 5378087

Neighbor

gene id symbol gene type direction distance location
LOC103028443 crybgx,LOC103028443,LOC105906490,LOC103368872,LOC108259467,LOC102304589,LOC102204928 coding upstream 165384 5198798 ~ 5205566 (+)
dis3l dis3l,LOC107740444,LOC107663953,LOC107664394,LOC107755103 coding upstream 203652 5146969 ~ 5167298 (+)
muc15 NA coding upstream 226066 5131893 ~ 5144884 (+)
LOC103030650 nr1h3,LOC107689968,LOC107664377,LOC107755109 coding upstream 476263 4862196 ~ 4894687 (+)
tshz3 tshz3,tshz3b,LOC108429148,LOC107570485,LOC107556246,LOC107696607 coding upstream 1625824 3657859 ~ 3745126 (+)
map2k5 map2k5 coding downstream 63453 5441540 ~ 5533366 (+)
LOC103026906 pias1a,pias1b,LOC108430823,LOC108259600,LOC107553093 coding downstream 186172 5564259 ~ 5652806 (+)
LOC103026610 LOC103026610,LOC108430825 coding downstream 281511 5659598 ~ 5660875 (+)
LOC103042267 LOC108430822 coding downstream 311699 5689786 ~ 5814523 (+)
LOC111191167 NA non-coding upstream 119538 5251022 ~ 5251412 (+)
G299918 NA non-coding upstream 121338 5249218 ~ 5249612 (+)
G299912 NA non-coding upstream 122856 5210722 ~ 5248094 (+)
G299901 NA non-coding upstream 161417 5125958 ~ 5209533 (+)
G299896 NA non-coding upstream 303328 5066097 ~ 5067622 (+)
G299934 NA non-coding downstream 97973 5476060 ~ 5508588 (+)
G299932 NA non-coding downstream 143425 5521512 ~ 5535585 (+)
G299938 NA non-coding downstream 145148 5523235 ~ 5524082 (+)
G299946 NA non-coding downstream 199976 5578063 ~ 5579719 (+)
G299948 NA non-coding downstream 236932 5615019 ~ 5615717 (+)
LOC111191166 NA other upstream 114639 5253574 ~ 5256311 (+)
G299903 NA other upstream 200842 5168626 ~ 5170108 (+)
madd madd,LOC107755105 other upstream 343529 4902634 ~ 5027421 (+)
LOC103025330 si:ch211-186j3.6,LOC108442966,LOC108259100,LOC106562040,LOC105022727,LOC107696606,LOC107572394,LOC107712488,LOC107680491,LOC107565684 other upstream 2443088 2398717 ~ 2927862 (+)
G299477 NA other upstream 3166695 2187333 ~ 2204255 (+)
LOC111191164 NA other downstream 165725 5543812 ~ 5548569 (+)
LOC111191158 skor1a,LOC108430798,LOC108259147,LOC107563488,LOC107663943,LOC107553092 other downstream 173006 5551093 ~ 5556428 (+)

Expression


Co-expression Network