G299934


Basic Information

Item Value
gene id G299934
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172830.1
NCBI id APWO02000048.1
chromosome length 5891159
location 5476060 ~ 5508588 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU412574
aaatcagagaaactgattcagaaactgaagtgctctctTTTTATATCAGAAGCTGTTTTTGTAACTGTataactctttctctttctccgtctatctctctctctctttcacactctctcacacacacacacacgttcactACACACTTTGCTGGGGTAATGTAGCTGACCAGGCTTCAGAGCACAGAAGCTGTGTGGTGTTGCATTAACCTTGACCTGCGCTCGGCACTAAAATACACCCACCTGAAACCTTGACACACTTCCTCACCTCATCTCTCTGAGCTAGCCGGGGTGAGGGACAGTGAGTCCATATATTCCCAACACTGGACAAGCTCACTGCTCCATATTCCACTGCTCTTTGGCTTAAGTTGAGTCAAGACAGATAGTCAACCGCGTCTGAAAGCAAAGCAGACTGAGGACGAGAATTCTGACTGGCTTCAGACAGCTGAACCCAGGTCTAAAAAGTTAGGACAATGTGTAAAAtggtaataaatgtaaatagaaGTAGAATGCTATAAATTGCAGATCTCATAATGTCCACATTTTATTGACAAATTAAACATAGTACTAGTTCTTAGTACTTAGTATTTGATGGCAGCAACACATCTAaaaatagttgggtcaggaaaCAAAAGGCTGGAAAAGTAGTTGGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU412574 True 652 lncRNA 0.42 2 5476060 5508588

Neighbor

gene id symbol gene type direction distance location
LOC103027811 smad3,smad3a,LOC108430827,LOC103353199,LOC107740443,LOC107553101 coding upstream 102720 5327517 ~ 5373340 (+)
LOC103028443 crybgx,LOC103028443,LOC105906490,LOC103368872,LOC108259467,LOC102304589,LOC102204928 coding upstream 270494 5198798 ~ 5205566 (+)
dis3l dis3l,LOC107740444,LOC107663953,LOC107664394,LOC107755103 coding upstream 308762 5146969 ~ 5167298 (+)
muc15 NA coding upstream 331176 5131893 ~ 5144884 (+)
LOC103030650 nr1h3,LOC107689968,LOC107664377,LOC107755109 coding upstream 581373 4862196 ~ 4894687 (+)
LOC103026906 pias1a,pias1b,LOC108430823,LOC108259600,LOC107553093 coding downstream 55671 5564259 ~ 5652806 (+)
LOC103026610 LOC103026610,LOC108430825 coding downstream 151010 5659598 ~ 5660875 (+)
LOC103042267 LOC108430822 coding downstream 181198 5689786 ~ 5814523 (+)
G299925 NA non-coding upstream 97973 5370950 ~ 5378087 (+)
LOC111191167 NA non-coding upstream 224648 5251022 ~ 5251412 (+)
G299918 NA non-coding upstream 226448 5249218 ~ 5249612 (+)
G299912 NA non-coding upstream 227966 5210722 ~ 5248094 (+)
G299901 NA non-coding upstream 266527 5125958 ~ 5209533 (+)
G299932 NA non-coding downstream 12924 5521512 ~ 5535585 (+)
G299938 NA non-coding downstream 14647 5523235 ~ 5524082 (+)
G299946 NA non-coding downstream 69475 5578063 ~ 5579719 (+)
G299948 NA non-coding downstream 106431 5615019 ~ 5615717 (+)
G300097 NA non-coding downstream 269549 5778137 ~ 5817187 (+)
LOC111191166 NA other upstream 219749 5253574 ~ 5256311 (+)
G299903 NA other upstream 305952 5168626 ~ 5170108 (+)
madd madd,LOC107755105 other upstream 448639 4902634 ~ 5027421 (+)
LOC103025330 si:ch211-186j3.6,LOC108442966,LOC108259100,LOC106562040,LOC105022727,LOC107696606,LOC107572394,LOC107712488,LOC107680491,LOC107565684 other upstream 2548198 2398717 ~ 2927862 (+)
G299477 NA other upstream 3271805 2187333 ~ 2204255 (+)
LOC111191164 NA other downstream 35224 5543812 ~ 5548569 (+)
LOC111191158 skor1a,LOC108430798,LOC108259147,LOC107563488,LOC107663943,LOC107553092 other downstream 42505 5551093 ~ 5556428 (+)

Expression


Co-expression Network