LOC111191164


Basic Information

Item Value
gene id LOC111191164
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172830.1
NCBI id APWO02000048.1
chromosome length 5891159
location 5543812 ~ 5548569 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU412579
ATAGGAGTACCGGTAGGAGCTGGTGGAGGAAGGAGCCCACCGGGAGAGAGTGAACGTGAACGCGAGCGCTGGACCGACGACGACAGGTCAGGAGAGGAAACAAGGTCGCGGGACAGTCACGTGAGCCACGTGTCCGCCTTCAGACCAGTGCTGAGGGACGCGGAGAGCATCGCCAAGCTGTACGGCCACCGAGAGGCGCGCGCCGTCGGACCACCAGCCGGACACCTGTCTCCAGAGCTGGCCAGCTCGAGCTCCAGCTACAGGTCGGTGTCCCCAGATGTGGACAGCGCGGAGGAGCCAGACGTGGACGTAGAATCCAACCGAGCGCCCGAGGACGAGGAGGAGCTGCAGCACAGCCCGCTCAGAGAGCCACACCGACCTGCAGAGGAGGAGCCGCCGCAGGTCCGGAGCGCGAGCAGCCCGGAACCCGAGACCGGAGGATCTACCGAGGAGGAACCGAGGGGCGAGACTGGCCCGGACAGAGATGCACCCGCGTGCGAGGTGTGTGAGAAGGACACGGCGGTGTGTTTGAACCCTGCGCTCGTGCCAGCACCCCCCAGATACCCCCTCAGCCCACCACAAGGTAAACCTGCACCAGGTACAcacatttataggtatatgaagtaaacattgttgttttattttataaact
>XM_022665277.1
CATATGATAAGAAGTGGCGCGCGCGAACGAGCTCTGGGCCTGCCACGTGCTCACGGGTCTCCCACTCAGTCTCTTGCgcgcacacaacacacacacacacacacacggcacgAGCCCTGGGCTGACGGAGATGCGCGCTGTAGTCTGAGGCGCGCTGCCGAGGAGAGAGAGGATTCGCGGCGCAGGACGGCTTTAGACGGCTCTGGACGTGTTTGTGAACATTTGGAGCGACCGGGCCTCCAGCACTGTCTGAATTTCGTTGGGAAATAAAGTTCTCCACTCATGGAGGCTCTGAGCTCGCCCCTGCCCCCGGTCCGGGACTCCAGCTCTTCCCCGCGGCCTCCGGCCGACTTGCAGCCCTTCCCGGGCGGAGGAGGCTCGCTGAAGGCCAACACGGTGAGCGAGACGTGTCTGTACGGCGTGCCCATCGTGTCCCTGCTGATCGACGGCCAGGAGCGCCTGTGCCTCGCGCAGATCTCCAACACGCTGCTGAAGAGCTACAGCTACAACGAGATCCACAACAGGCGCGTGGCACTGGGCATCACTTGCGTGCAGTGCACGCCTGTGCAGCTGGAGATTCTGCGGCGCGCGGGCGCCATGCCGGTGTCGTCGCGCCGCTGCGGCATGATCACGAAGCGCGAGGCCGAGCGCCTGTGCAAGTCGTTCCTGGGCGCGCACTCGCCGCCCAAACTGCCCGAGAACTTCGCCTTTGACGTGTCGCACGAGTGCGCGTTCGGCTGCCGGGGCAGTTTCATCCCTGCGCGCTACAACAGCTCGCGCGCAAAGTGCATCAAGTGCGCGCACTGCGGCATGTACTTCTCGCCCAACAAGTTCATCTTCCACTCGCACCGCGCGCCCGACTCCAAGTACACGCAGCCGGACGCGGCCAACTTCAACTCGTGGCGCAGACACCTCAAACTCAGCGACAAGACCTCGTCGGAGCACGTGTGCCACGCGTGGGAGGACGTTAAGGCCATGTTTAACGGCGGCAGCAGAAAGAGGACGGTACCGTTTGGCGGCTCGGAGTCGCGCTCTCCAATGGGGGCTCTGCGCGCGGgcggaggtggaggtggaggcgCATCCCCGGAGCTCGCGCGTAAAACACCGCGTTGCAGTAGTGGCAGTGGCGGCAGTGGTGCTGACAGTGTTGTCGTGGGCGCGGAGGACGAGCGCGCGATTTCGGGCATACGCGCGCCCTCCTACCCGCTCGTCCCGTTACCTAGCAAAGGCTTCGGTGCACTGCACAAGCTGCACGCGCCTTTCTTCCCGCACCCATACGGAGGCTTCCCCACGTTTGGCGCGTGCCAAAAGAAAGATGGCACCGGGGTTGGAGTAGGCGGCGGTGGCAGTGGCGGAGATGAAAGCCGCGTGACCGACACGCACAAGGTGGCTACAGCGGCTACGGCAGCGGCggctgcagcggcggcagcggctGCGTTCTGGCCGGGTGCCAAGGACGCGGCGCTTTACCCGGCTTTCCCGGTGTTCTGGCCTACGGCGGGCGGCCTGCACGTGCCCGCTTATCCACACCAGGCGCAGGCGCGCCTCAAGGCGCACACCGATCTGGCACCGGAATTGCGTGAGAGCGAGCGAATAGGAGTACCGGTAGGAGCTGGTGGAGGAAGGAGCCCACCGGGAGAGAGTGAACGTGAACGCGAGCGCTGGACCGACGACGACAGGTCAGGAGAGGAAACAAGGTCGCGGGACAGTCACGTGAGCCACGTGTCCGCCTTCAGACCAGTGCTGAGGGACGCGGAGAGCATCGCCAAGCTGTACGGCCACCGAGAGGCGCGCGCCGTCGGACCACCAGCCGGACACCTGTCTCCAGAGCTGGCCAGCTCGAGCTCCAGCTACAGGTCGGTGTCCCCAGATGTGGACAGCGCGGAGGAGCCAGACGTGGACGTAGAATCCAACCGAGCGCCCGAGGACGAGGAGGAGCTGCAGCACAGCCCGCTCAGAGAGCCACACCGACCTGCAGAGGAGGAGCCGCCGCAGGTCCGGAGCGCGAGCAGCCCGGAACCCGAGACCGGAGGATCTACCGAGGAGGAACCGAGGGGCGAGACTGGCCCGGACAGAGATGCACCCGCGTGCGAGGTGTGTGAGAAGGACACGGCGGTGTGTTTGAACCCTGCGCTCGTGCCAGCACCCCCCAGATACCCCCTCAGCCCACCACAAGGTAAACCTGCACCAGGTACAcacatttataggtatatgaagtaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU412579 False 652 lncRNA 0.62 2 5546758 5548569
XM_022665277.1 True 2221 mRNA 0.65 3 5543812 5548545

Neighbor

gene id symbol gene type direction distance location
map2k5 map2k5 coding upstream 10446 5441540 ~ 5533366 (+)
LOC103027811 smad3,smad3a,LOC108430827,LOC103353199,LOC107740443,LOC107553101 coding upstream 170472 5327517 ~ 5373340 (+)
LOC103028443 crybgx,LOC103028443,LOC105906490,LOC103368872,LOC108259467,LOC102304589,LOC102204928 coding upstream 338246 5198798 ~ 5205566 (+)
dis3l dis3l,LOC107740444,LOC107663953,LOC107664394,LOC107755103 coding upstream 376514 5146969 ~ 5167298 (+)
muc15 NA coding upstream 398928 5131893 ~ 5144884 (+)
LOC103026906 pias1a,pias1b,LOC108430823,LOC108259600,LOC107553093 coding downstream 15690 5564259 ~ 5652806 (+)
LOC103026610 LOC103026610,LOC108430825 coding downstream 111029 5659598 ~ 5660875 (+)
LOC103042267 LOC108430822 coding downstream 141217 5689786 ~ 5814523 (+)
G299932 NA non-coding upstream 8227 5521512 ~ 5535585 (+)
G299938 NA non-coding upstream 19730 5523235 ~ 5524082 (+)
G299934 NA non-coding upstream 35224 5476060 ~ 5508588 (+)
G299925 NA non-coding upstream 165725 5370950 ~ 5378087 (+)
LOC111191167 NA non-coding upstream 292400 5251022 ~ 5251412 (+)
G299946 NA non-coding downstream 29494 5578063 ~ 5579719 (+)
G299948 NA non-coding downstream 66450 5615019 ~ 5615717 (+)
G300097 NA non-coding downstream 229568 5778137 ~ 5817187 (+)
G300111 NA non-coding downstream 270999 5819568 ~ 5819974 (+)
G300112 NA non-coding downstream 275410 5823979 ~ 5824250 (+)
LOC111191166 NA other upstream 287501 5253574 ~ 5256311 (+)
G299903 NA other upstream 373704 5168626 ~ 5170108 (+)
madd madd,LOC107755105 other upstream 516391 4902634 ~ 5027421 (+)
LOC103025330 si:ch211-186j3.6,LOC108442966,LOC108259100,LOC106562040,LOC105022727,LOC107696606,LOC107572394,LOC107712488,LOC107680491,LOC107565684 other upstream 2615950 2398717 ~ 2927862 (+)
G299477 NA other upstream 3339557 2187333 ~ 2204255 (+)
LOC111191158 skor1a,LOC108430798,LOC108259147,LOC107563488,LOC107663943,LOC107553092 other downstream 2524 5551093 ~ 5556428 (+)

Expression


Co-expression Network