LOC111191158 (skor1a,LOC108430798,LOC108259147,LOC107563488,LOC107663943,LOC107553092)


Basic Information

Item Value
gene id LOC111191158
gene name skor1a,LOC108430798,LOC108259147,LOC107563488,LOC107663943,LOC107553092
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172830.1
NCBI id APWO02000048.1
chromosome length 5891159
location 5551093 ~ 5556428 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU412581
tttatttctgttctcAGTGGAGGCGGCACTAAGGACTGAGAACAGAtttcacttcatccagaaagaCTTCCAGAACATGGCAAAAGAGGAACTCCAgaagcagctggtggagcaaatGGAGCTCAGAAAGAAAATGGAGCGAGAATTTCAGAGCCTGAAAGATCATTTTCAGGACCAGATGAAGAGAGAGCTGTCCTACAGAGAGGAGATGGTTCAGCAGCTGCATATAGTGAGAGCTCACGACGCTATACACCACTTCTCCTGCAAGATGCTCACTCCACGCCACTGCACTGGGACATGCACCTTTAAACCACCCCTGCTGCCACCTTAACCAGTTCCACCACTGCTCTCCACACACAGCACAACCACCAGACCTCTCCAGGGACCCTCCGTTCTGATTCAGAACAGACTATTCTTCATAGAAACTTTCCAGGAACTTTCCAGGAACTGCTAAGAAGTGTGCAGGCGTCCAGACGGCTCTGCAAATTCTGCTAAAACTGGACTTCAGAGAAGCTCAGCAGAGCAGATGCCACTGGTTCGGAGTGGAATAGGTGAATTAAttgatataaatactgtatatgtatcaTAGTATGACAATATATGTACAATAgtatgaaatacatttttttcttaaaatgccacaaagtacaaaaaaaatgtggccaTGTGCAATGTGGAACTTCAAAacctgtaattaattatttattcttaaacGTTCATAATTCACGTGTTTTTAcgttaatttttgttttttctctcgCTCCAAActttcactgattcactgatgaATTCACGAACGTGCTCTCCCAaatgtatatgtaatatttatatagagatatataagCACTTTAAGCCtgggagaaaaataaagataagACCTACCTAATCTTACCTAATTTATTCTgcct
>XM_022665237.1
tttctgttctcAGTGGAGGCGGCACTAAGGACTGAGAACAGAtttcacttcatccagaaagaCTTCCAGAACATGGCAAAAGAGGAACTCCAgaagcagctggtggagcaaatGGAGCTCAGAAAGAAAATGGAGCGAGAATTTCAGAGCCTGAAAGATCATTTTCAGGACCAGATGAAGAGAGAGCTGTCCTACAGAGAGGAGATGGTTCAGCAGCTGCATATAGTGAGAGaCACTTTGTGCAACGAGTTGGATCAAGAGAGAAAGGCTCGTTATGCAATTCAGCAGAAACTGAAAGCTCACGACGCTATACACCACTTCTCCTGCAAGATGCTCACTCCACGCCACTGCACTGGGACATGCACCTTTAAACCACCCCTGCTGCCACCTTAACCAGTTCCACCACTGCTCTCCACACACAGCACAACCACCAGACCTCTCCAGGGACCCTCCGTTCTGATTCAGAACAGACTATTCTTCATAGAAACTTTCCAGGAACTTTCCAGGAACTGCTAAGAAGTGTGCAGGCGTCCAGACGGCTCTGCAAATTCTGCTAAAACTGGACTTCAGAGAAGCTCAGCAGAGCAGATGCCACTGGTTCGGAGTGGAATAGGTGAATTAAttgatataaatactgtatatgtatcaTAGTATGACAATATATGTACAATAgtatgaaatacatttttttcttaaaatgccacaaagtacaaaaaaaatgtggccaTGTGCAATGTGGAACTTCAAAacctgtaattaattatttattcttaaacGTTCATAATTCACGTGTTTTTAcgttaatttttgttttttctctcgCTCCAAActttcactgattcactgatgaATTCACGAACGTGCTCTCCCAaatgtatatgtaatatttatatagagatatataagCACTTTAAGCCtgggagaaaaataaagataagACCTACCTAATCTTACCTA

Function

symbol description
skor1a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and SMAD binding activity. Predicted to be involved in negative regulation of BMP signaling pathway and negative regulation of transcription by RNA polymerase II. Predicted to be part of transcription regulator complex. Predicted to be active in nucleus. Orthologous to human SKOR1 (SKI family transcriptional corepressor 1).

NR:

description
PREDICTED: SKI family transcriptional corepressor 1 homolog-B-like isoform X1

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0046332 SMAD binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU412581 False 908 lncRNA 0.41 4 5551093 5556428
XM_022665237.1 True 957 mRNA 0.42 5 5551097 5556415

Neighbor

gene id symbol gene type direction distance location
map2k5 map2k5 coding upstream 17727 5441540 ~ 5533366 (+)
LOC103027811 smad3,smad3a,LOC108430827,LOC103353199,LOC107740443,LOC107553101 coding upstream 177753 5327517 ~ 5373340 (+)
LOC103028443 crybgx,LOC103028443,LOC105906490,LOC103368872,LOC108259467,LOC102304589,LOC102204928 coding upstream 345527 5198798 ~ 5205566 (+)
dis3l dis3l,LOC107740444,LOC107663953,LOC107664394,LOC107755103 coding upstream 383795 5146969 ~ 5167298 (+)
muc15 NA coding upstream 406209 5131893 ~ 5144884 (+)
LOC103026906 pias1a,pias1b,LOC108430823,LOC108259600,LOC107553093 coding downstream 7831 5564259 ~ 5652806 (+)
LOC103026610 LOC103026610,LOC108430825 coding downstream 103170 5659598 ~ 5660875 (+)
LOC103042267 LOC108430822 coding downstream 133358 5689786 ~ 5814523 (+)
G299932 NA non-coding upstream 15508 5521512 ~ 5535585 (+)
G299938 NA non-coding upstream 27011 5523235 ~ 5524082 (+)
G299934 NA non-coding upstream 42505 5476060 ~ 5508588 (+)
G299925 NA non-coding upstream 173006 5370950 ~ 5378087 (+)
LOC111191167 NA non-coding upstream 299681 5251022 ~ 5251412 (+)
G299946 NA non-coding downstream 21635 5578063 ~ 5579719 (+)
G299948 NA non-coding downstream 58591 5615019 ~ 5615717 (+)
G300097 NA non-coding downstream 221709 5778137 ~ 5817187 (+)
G300111 NA non-coding downstream 263140 5819568 ~ 5819974 (+)
G300112 NA non-coding downstream 267551 5823979 ~ 5824250 (+)
LOC111191164 NA other upstream 2524 5543812 ~ 5548569 (+)
LOC111191166 NA other upstream 294782 5253574 ~ 5256311 (+)
G299903 NA other upstream 380985 5168626 ~ 5170108 (+)
madd madd,LOC107755105 other upstream 523672 4902634 ~ 5027421 (+)
LOC103025330 si:ch211-186j3.6,LOC108442966,LOC108259100,LOC106562040,LOC105022727,LOC107696606,LOC107572394,LOC107712488,LOC107680491,LOC107565684 other upstream 2623231 2398717 ~ 2927862 (+)

Expression


Co-expression Network