G299946


Basic Information

Item Value
gene id G299946
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172830.1
NCBI id APWO02000048.1
chromosome length 5891159
location 5578063 ~ 5579719 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU412586
aggtgtgtagtgatgaactctgaagctacatgaagtttggaggtgtgtagtgatgaactctgaaggtacatgaagtttggaggtgggtagtgatgaactaatctgaagctacatgaagtttggagttgtgaagtgatgaactctgaagctacatgaagtttggaggtgtgtagtgagtgatgtactctgaagctacatgaagtttggaggtgtgtagtgatgaactaatctgaagctacatgaagtttggaggtggtgtagtgatgaactaatctgaagctacatgaagtttggaggtgtgtagtgatgaactctgaagctacatgaagtttgtaggtgtgtagtgatgatgaactctgaaggtacatgaagtttgga
>TU412587
aggtgtgtagtgatgaactctgaagctacatgaagtttggaggtgtgtaatgatgatgaactctgaagctacatgaagtttggaggtgtgtagtgatgaactctgaagctacatgaagtttggaggtgtgtagtgatgatgaactctgaagctacatgaagtttggaggtgtgtagtgatgaactaatctgaagcttcatgaagtttggaggtgtgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU412586 True 378 lncRNA 0.41 2 5578063 5579332
TU412587 False 217 lncRNA 0.41 3 5578063 5579719

Neighbor

gene id symbol gene type direction distance location
map2k5 map2k5 coding upstream 44697 5441540 ~ 5533366 (+)
LOC103027811 smad3,smad3a,LOC108430827,LOC103353199,LOC107740443,LOC107553101 coding upstream 204723 5327517 ~ 5373340 (+)
LOC103028443 crybgx,LOC103028443,LOC105906490,LOC103368872,LOC108259467,LOC102304589,LOC102204928 coding upstream 372497 5198798 ~ 5205566 (+)
dis3l dis3l,LOC107740444,LOC107663953,LOC107664394,LOC107755103 coding upstream 410765 5146969 ~ 5167298 (+)
muc15 NA coding upstream 433179 5131893 ~ 5144884 (+)
LOC103026610 LOC103026610,LOC108430825 coding downstream 79879 5659598 ~ 5660875 (+)
LOC103042267 LOC108430822 coding downstream 110067 5689786 ~ 5814523 (+)
G299932 NA non-coding upstream 42478 5521512 ~ 5535585 (+)
G299938 NA non-coding upstream 53981 5523235 ~ 5524082 (+)
G299934 NA non-coding upstream 69475 5476060 ~ 5508588 (+)
G299925 NA non-coding upstream 199976 5370950 ~ 5378087 (+)
LOC111191167 NA non-coding upstream 326651 5251022 ~ 5251412 (+)
G299948 NA non-coding downstream 35300 5615019 ~ 5615717 (+)
G300097 NA non-coding downstream 198418 5778137 ~ 5817187 (+)
G300111 NA non-coding downstream 239849 5819568 ~ 5819974 (+)
G300112 NA non-coding downstream 244260 5823979 ~ 5824250 (+)
LOC111191158 skor1a,LOC108430798,LOC108259147,LOC107563488,LOC107663943,LOC107553092 other upstream 21635 5551093 ~ 5556428 (+)
LOC111191164 NA other upstream 29494 5543812 ~ 5548569 (+)
LOC111191166 NA other upstream 321752 5253574 ~ 5256311 (+)
G299903 NA other upstream 407955 5168626 ~ 5170108 (+)
madd madd,LOC107755105 other upstream 550642 4902634 ~ 5027421 (+)

Expression


Co-expression Network