G300111


Basic Information

Item Value
gene id G300111
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172830.1
NCBI id APWO02000048.1
chromosome length 5891159
location 5819568 ~ 5819974 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU412802
atgataataaaataaatgtaaatctcTGGTTAATTCTTCATataaacagtaatatttttattaatggtAGGTTGTGCGCGCCGTATACAAATGCAATTTTACTACAAATACAGTTTggtctattaaataaaataatgtaaattaaatttaaacacaattagttagattaactgattattaaaataattattagttgcaGCCTGAcacctacagctctgaaaaaaatgagaccacttaaacttgatgagtttctttgattttaccaaattgaaaccctctgaaatataatcaagaggatgatggatgatcacaagccatcaaacgcCACAcaaatttttgtaccaggagtaaagcagcataaagttatccaaaagcagtgtgtaagactggtggaggagaacatgatg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU412802 True 407 lncRNA 0.30 1 5819568 5819974

Neighbor

gene id symbol gene type direction distance location
LOC103042267 LOC108430822 coding upstream 5045 5689786 ~ 5814523 (+)
LOC103026610 LOC103026610,LOC108430825 coding upstream 158693 5659598 ~ 5660875 (+)
LOC103026906 pias1a,pias1b,LOC108430823,LOC108259600,LOC107553093 coding upstream 166762 5564259 ~ 5652806 (+)
map2k5 map2k5 coding upstream 286202 5441540 ~ 5533366 (+)
LOC103027811 smad3,smad3a,LOC108430827,LOC103353199,LOC107740443,LOC107553101 coding upstream 446228 5327517 ~ 5373340 (+)
G300097 NA non-coding upstream 2381 5778137 ~ 5817187 (+)
G299948 NA non-coding upstream 203851 5615019 ~ 5615717 (+)
G299946 NA non-coding upstream 239849 5578063 ~ 5579719 (+)
G299932 NA non-coding upstream 283983 5521512 ~ 5535585 (+)
G299938 NA non-coding upstream 295486 5523235 ~ 5524082 (+)
G300112 NA non-coding downstream 4005 5823979 ~ 5824250 (+)
LOC111191158 skor1a,LOC108430798,LOC108259147,LOC107563488,LOC107663943,LOC107553092 other upstream 263140 5551093 ~ 5556428 (+)
LOC111191164 NA other upstream 270999 5543812 ~ 5548569 (+)
LOC111191166 NA other upstream 563257 5253574 ~ 5256311 (+)
G299903 NA other upstream 649460 5168626 ~ 5170108 (+)
madd madd,LOC107755105 other upstream 792147 4902634 ~ 5027421 (+)

Expression


Co-expression Network