LOC103044644


Basic Information

Item Value
gene id LOC103044644
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172830.1
NCBI id APWO02000048.1
chromosome length 5891159
location 1579110 ~ 1580936 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007231730.3
TTTGAGAGGTTCCGTAACTCAAACGCATCCTCCAGCTGAACAGCACTGATATTTACGCACAATGGCTCACGTTGAGGTACCGAGTCTACTGGAGCGACACGCCGCCCGGAGGACGTTTCCGATGCTGGCCCGGACCAAGGTCTGCCGGAGCCTCTTCGGACCGGTGGACCACGAGGAGCTGAACCGGGAGATGAAGCAGAAGCTGCAGGAGATCTCGGAGCGCGAGCGTAGCCGCTGGAACTTCAACTTCGAGAACAACTCGCCCCTGCCTGGGAATTACGAGTGGGAGGAGGTGGGCGCGCGGTGCGTACCGGATTTCTATCGGGACTCTGGTCGGTGCGGCGTAAAACCGCGGACTGCTTTAATTAATCACGTTAAGGTGGAGAGCGCGGAGTGCGCGGGGGAAAACGCCGAACCGGAGGTGGTGCGTCCCGCCGCTGAGGTCAACCAGGAGAACCGGTCCGGAGCTCTGAACGGAACACCGACGTGCGCACGCAAAAAGAGACGGAGTCGGTCGGTGCAGGAGTCTCCCAGAAGTAGCAGCACTCAAATTACAGACTTTTTCCCCAAAAGAAAGAGGTCCGCAGAAAGCTCCTCCATCCCTGTTGAAATCACACCCCGCAAGAGAATCAGATGatattttttccagttttcaGTTTGTTTGTGGACGACCAGCTCCGGCGTTTATCTGCTGAGCGGATGACGGACGCGGGGCGGAAAGACGGACATAAACAAAGACATAAAAccgacaaacaaacagacagattgaaaaaaaaaagctcgaTCTCGATCTTTTATGATCTGATGTATGTAGCAATACTGGCTCTGCCAAACGGACTCAAGTTGCAGTGTTACAAACTTCTCAAACGGTgcaattttttaatattttgtttgagattttttttattgtgttctttgattatgttttattttatttttgtgttggtAGGCTACAGATTCTAGTTTAGATTCTAGCCTTATTAGGATTATTTTGTTCGTTTTTGTTTCGTGTATGTTTTTGTTGTCCTAATTTatggtgttttaatttatgatcCACCGCAGTTTGGtcacttttttaatttactgctgtttatttactgcaatattttaagttttatgtttaatgttttatttaagtttcTGCCGGATGATTGTCATGCAAATAATGTCTCTGAGCcgatgtttaatatatatatacgtatatatttcCGAGCTTTGTacgaaaatgaatgaatgaatcacgaaaaaaataaattatatttttgttta

Function

GO:

id name namespace
GO:0001708 cell fate specification biological_process
GO:0050790 regulation of catalytic activity biological_process
GO:0010001 glial cell differentiation biological_process
GO:0045930 negative regulation of mitotic cell cycle biological_process
GO:0042325 regulation of phosphorylation biological_process

KEGG:

id description
K09993 CDKN1C, P57, KIP2; cyclin-dependent kinase inhibitor 1C

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007231730.3 True 1269 mRNA 0.45 3 1579110 1580936

Neighbor

gene id symbol gene type direction distance location
LOC111188231 NA coding upstream 17081 1558494 ~ 1562029 (+)
traf6 traf6 coding upstream 76130 1492578 ~ 1502980 (+)
LOC103021976 LOC108438545 coding upstream 149871 1419036 ~ 1429239 (+)
LOC103044962 LOC108259203 coding upstream 165515 1384340 ~ 1413595 (+)
LOC111191157 NA coding upstream 238314 1337771 ~ 1340796 (+)
tshz3 tshz3,tshz3b,LOC108429148,LOC107570485,LOC107556246,LOC107696607 coding downstream 2076923 3657859 ~ 3745126 (+)
LOC103030650 nr1h3,LOC107689968,LOC107664377,LOC107755109 coding downstream 3281260 4862196 ~ 4894687 (+)
muc15 NA coding downstream 3550957 5131893 ~ 5144884 (+)
dis3l dis3l,LOC107740444,LOC107663953,LOC107664394,LOC107755103 coding downstream 3566033 5146969 ~ 5167298 (+)
LOC103028443 crybgx,LOC103028443,LOC105906490,LOC103368872,LOC108259467,LOC102304589,LOC102204928 coding downstream 3617862 5198798 ~ 5205566 (+)
G299283 NA non-coding upstream 11220 1467881 ~ 1567890 (+)
LOC111191159 NA non-coding upstream 69721 1489671 ~ 1509389 (+)
G299266 NA non-coding upstream 162492 1409986 ~ 1416618 (+)
G299265 NA non-coding upstream 170492 1401431 ~ 1408618 (+)
G299251 NA non-coding upstream 211183 1365439 ~ 1367927 (+)
G299437 NA non-coding downstream 139986 1720922 ~ 1722099 (+)
G299438 NA non-coding downstream 141298 1722234 ~ 1723281 (+)
G299458 NA non-coding downstream 251102 1832038 ~ 1832901 (+)
G299472 NA non-coding downstream 265303 1846239 ~ 1846495 (+)
G299475 NA non-coding downstream 273649 1854585 ~ 1854786 (+)
LOC103047296 NA other upstream 12032 1562838 ~ 1567078 (+)
G299236 NA other upstream 254256 1324420 ~ 1324854 (+)
G299226 NA other upstream 361004 1217809 ~ 1218106 (+)
G299046 NA other upstream 872286 705160 ~ 706824 (+)
G299000 apip other upstream 1108490 462414 ~ 470620 (+)
G299477 NA other downstream 606397 2187333 ~ 2204255 (+)
LOC103025330 si:ch211-186j3.6,LOC108442966,LOC108259100,LOC106562040,LOC105022727,LOC107696606,LOC107572394,LOC107712488,LOC107680491,LOC107565684 other downstream 817781 2398717 ~ 2927862 (+)
madd madd,LOC107755105 other downstream 3321698 4902634 ~ 5027421 (+)
G299903 NA other downstream 3587690 5168626 ~ 5170108 (+)
LOC111191166 NA other downstream 3672638 5253574 ~ 5256311 (+)

Expression


Co-expression Network