tshz3 (tshz3,tshz3b,LOC108429148,LOC107570485,LOC107556246,LOC107696607)


Basic Information

Item Value
gene id tshz3
gene name tshz3,tshz3b,LOC108429148,LOC107570485,LOC107556246,LOC107696607
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172830.1
NCBI id APWO02000048.1
chromosome length 5891159
location 3657859 ~ 3745126 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007246944.3
GTGAAGAAGAttctctcgctcacacacacacacacacacacacacacacacacagacacacactctctcttacacacacacacacacacacacacttacacacaaaagAAGGAGTTAAAGTGCCATTAGtggagcggcagcagcagcagcttcgctttcctcctcctcctcctacgACCAGGCGGCTCCAATCGAGCGCCGATCGCGTCGTTCCTTCGTCGCCGCGCTCTCTGTTGGATTCggactgaaaacacacacacacactcgtagacacactcacacatagacacacactgaGAGACAGTGTGTCCATGTCCATCCCACCTTCAAACCTGTGTGTTTTTACACATTCACAACAAACCGCAAAGCAGTTGGACATCTGATCATCTCTCCTGATCTCTTTGGGATCAATCATTTCTGGATCTCTTGATCGTTTTTTGGacaatatttatgtttatatatattttttctgctattttttattgctttttttatttttttcacatcaaTAAAAGATGGATAGCAGCTTGAGCAGAAGACGGATGCATTGCTTGCCTGTTGCGGCTTCCAGCGCCGAGTGAGACGCGCGTTGAAGGCGGCAGAAGCGGtcgctctcttttttcccttctttctccctctctctcttttttttctatctatctctctccttttttgaaCCCTCAATCCACCCTCTCTATACCACTATATCTCCGGCTATTGGCTCTCTACTGTTCTACCGCTCTAGTggacgaggaggaggagaaaaagaaaagaacagtgacaaaaaaagaagagaagaggagaggaagaagaaggaggacgAGAGGAACAGAGGGAAAGAGCGAAAAAGGAAAAGGAGCGAGCGAACGAACCGCGGAGAGAGGAGGGACGAACCTCCGCACCATCTCAGCCCCCAACCGGGGTGGTCTCCgctccgctctctctctttttgttcccccctctccctctcttttttgtgAGGGGGGGATTTTCTTCATCTTTGCATCTTTGGtgactatatttatttttatatatttttttctggggGGGACAAACTGCTCATCTATGCCAGgcttttgagaaaaaaaacccGACCCCCGGCAGCCCCCCAGTTCAATCCCTCCTTCCCCCTGCCTGCCGAGCCGAGCGGAGCGCAGCGGCTGGCTGGCCGCGTCGTGGCCGAGCTCGGAGTCGACACACGCGGGGAGAGACGCGGGCAGCGGCCGGCGGCGGAGGCAGCAGCGGGGCAGCGGCAGCAGCGGTAGCGGGCAGCGGGCAGCAGCATGCCGCGGAGGAAGCAGCAGGCGCCCCGGCGCTCCGCAGCATATGTTCCTGAGGAGCTAAAAGAAGCTGCCTTGATGGACGAGGACGTGGACGGAGATGATTCAGCGATTGAAGAGGAGCCTGCCATCAAGTACATGTGCCAGGACAAGGACTTCCTCCTCAAAGACCGGCCAGGCTTCCACGACTCGCCGGCCGCGGACCTCTCCAGCCACGAGATGGACAGTGAATCACACCTCAGCGAGTCCAGTGACCGCATGTCAGACTTCGAGAGTGCCTCGGTGAAGAACGAGGAGGACGGCACTGCCAAGGAGCCACTTACGTCACTGTCTTCAAGCGCATCCATGAGGATGACCAACACGACGgcaccacccagcagcgaggAAGCTGCCGCGGCAGGCCCGGACAGCCTGGAGCAGATGAAGGCTATCTACACCAGCTTCCTGACCAATTCCTACTGGTCGTCCCTGAACTTGAACATGACGCAGCCTCCACCCGAAAAACCCCCTCGCAGCcacagcagtagcagcagcagtagcagcagcagcagctgcggAAGTGGAGGCTACGATTGGCACCAGTCGGCCGTGGCCAAGACCTTGCAGCAGGTCacacagaaccagaacagaataCTGCACCCGGCATCTGAGCCAAACCTCTTTAGCACTGTGCAGCTCTACCGGCAAAGCACCAAGCTCTACGGCTCCATCTTCACTGGTGCCAGCAAGTTTCGCTGCAAGGACTGCAGTGCTGCCTACGACACACTGGTTGAGCTGACTGTGCACATGAACGAAACAGGGCACTACAGAGATGATAACCATGAAACAGACAGTGAGGGCACGAAGCGCTGGTCCAAGCCCCGCAAGCGTTCCCTGCTGGAGATGGAAGGCAAGGAGGATGCCCAGAAAGTCCTCAAGTGCATGTACTGTGGCCATTCCTTCGAGTCACTACAGGATCTCAGTGTCCACATGATCAAGACGAAACACTACCAGAAAGTGCCTCTCAAGGAGCCGGTGACACCAGTGGCCGCCAAAATCATTTCTTCAGCTCGCAAAAGAGCCCCCATCGAGCTGGAACTTCCCAGCTCACCGGACTCCAACGGAGGCACCCCCAAACCTTCTCTCTCAGACACCAGTGACCTTCTGCAGAAGACCGCAAAtccctacatcactccaaaTAACCGCTACGGCCATCAGAATGGTGCAAGCTACGCATGGCAGTTCGAATCTCGGAAGTCCCAGATCCTGAAGTGCATGGAGTGCGGCAGTTCCCACGATACCCTTCAGGAGTTAACAGCCCACATGATGGTGACAGGCCACTTCATTAAGGTCACCAACTCCGCCATCAAGAAAGGCAAGCCCATTATGGAGTCGCCTACAACCCCAGCCCCTACCACTATGCCCTCCACAGAGGATAAGATCCAGTCAGTACCACTAGCTGCCACAGCTTTCTCCCCACCTCCACCTGCACCCCCTCCGCCAAGCATATCCCCTGCCATCAGCGCTATGGAAatcaaaaaagaggaaaaagaagaagagtgcACCAAGGAAATCATCATCAACAGCAAAGAGAAGAAAATGACAGATGATGAACCAGAGGAGAAGTTTGACATTTCATCCAAGTATCCCTATTTGACGGAAGAAGACCTGGAAGAAAGCCCTAAAGGTGGATTTGACATCCTAAAGTCACTGGAAAACACTGTCACATCAGCCATCAACAAAGCACAGAACGGCACACCCAGCTGGGGAGGCTACCCCAGCATCCATGCCGCCTACCAGCTACCAAACATCATGAAGCTTTCCTTGCGCAACTCAGGAAAGAGCTCCCCTCTGAAGTACATGTTCTCTGGCGAAGAGATCCTGTCACCAACCAAAAGCCAACCCCTCATCTCCCCTCCAAGCTGCCAGACCTCACCTCTGCCCAAAAATAACTTCCACGCCATGGAGGAACTTGTCAAGAAAGTAACGGAAAAGGTAGCCAAAGTTGAAGAGAAGATGAGGGATCCCGGTGCAAGAGCTTCCCCGCTGAGAAGAACCACGCCGTCCCCATGCAGTAGCGAAGCTGGAGACTCCGCCAGAGGAGAGTCACccaaagagaggagaggagccaAAACGCCAGAGAGCAACGGCTCAGCAAATGTTCACAAGGACTCCAACGGTGAGGCCCTCAATTCTAAAGAGTCTTTAGAGAATGGCACTGACCATGCTGTGAAAACTCCCGTCACCTCCATGTGCAGCAGCACGGCGATTATCACTGACCATCCTCCAGAACAGCCATTCGTCAACCCCTTAAGTGCACTTCAGTCTGTCATGAATGTTCATCTAGGCAAAGCTGCTAAACCTGCCCTCCCATCTCTCGACCCCATGAGCATGCTCTTCAAGATGAGCAACAGTTTGGGAGAGAAGGCGGCCGTAGCCGCCTCCACTCCGGCTCAGACCAAAAAGACGAACGAGCATCTCGACCGCTATTTCTATCACATCAACAATGACCAGCCAATTGACCTGACCAAAGGCAAGAGCGAAAAGAGCAGCTCCATGGGATCAGCCGTACTGTCTTCCTCCACCTCGACTCCTTCTTCAGTGTCGCCCTCCTCAACCATCACCATGGCCAAGGCTTCCTCAGCCGTGGCTTCATTCATGTCCAACTCACCCTTGCGTGAAAACGCCCTGTCCGACATCTCGGACATGCTGCGCAACCTTACGGAAAGCCATGTCTCCAAATCTTCCACACCAACCAGTCTGTCTGAGCGGTCAGATATCGACGGTGCTACACATGAAGAGACAGAGGACATGTCGCCGGCTCAGAAGCGCAAGGGCCGACAGTCCAACTGGAACCCTCAGCATCTGCTTATCCTGCAAGCGCAGTTCGCTTCAAGCCTGCGGCAAACGGGCGACGGCAAGTACATCATGTCCGACCTCAGCCCGCAGGAACGCATGCACATCTCTCGCTTCACCGGCCTCTCGATGACCACCATCAGCCACTGGCTCGCCAACGTCAAGTACCAGTTGAGGAGGACGGGTGGCACCAAGTTCCTGAAGAACCTTGACTCCGGTCATCCCGTCTTCTTCTGCAGTGACTGTGCTTCACAGATACGCTCCCCCTCCACCTACGTCAGCCACCTTGAATCCCACTTGGGCTTCCGGATTAGAGACTTGGCCAAGTTGTCCGGGGAGCAGCTAGCCAGCCAAATCACGCGCCACACTAAGGGACTTTCTGAGAAACTGCTTTCAGCCCAAGCTCACGTCCTGGCGCACTCGCTCTCAAACCCAAACATCACTCCCAGCCCCAGTCCCCATTCCCATTCCCACTCGCACTCGCCCTCCCCTTCCGCAGAAGAAGAGGCCAACGGCACTGCGTACCAGTGTAAACTGTGCAATCGGACTTTCGCTAGCAAGCATGCTGTCAAACTTCACTTGAGCAAGACTCACGGCAAATCCCCCGAGGACCACCTCTTGTTTGTCTGTGAACTCGAGAAACCTTAGCGGTGGTCAAGGACACAAAAAAGACTCAAAGGTTGAAGTGGTCCTCCACTTCCCACTGTTCCTCTTGCTTTCTCCGAAGCCTTCAGACGAACTGATTTcgtttagtaaaaaaaagcaagacCTGAAAACAAAAAGAGACACTGACTGACTAACACAAAGAACTAACTGCACATAGATGCCATTAAACTACTGTCTAGTTTCGGCACATGATGCGCGGAGGGTTTTCCTCCCGGGATAACTCATACTGGTCCAGAGACGTTctgttttttccccctcattTTAGGTCAAATGAACTGAaaatgtagagagagaaaaaaaaacgactttTCTAACTGTGCAGTGTTGAGTGAAGAGGTGCTGTTGTCACTGGTAAAACATGAAGGtatataagataaaaaaatgactttaaatgaaGTTGTATGTATTTGAAAGTTGTGTAAATTTGATTCACCTTTTGTTTTCCTCCTTTCTTTGGCATCGCTGAGATGCAGTAAGCTGCATGCATTGATGAAACGGTTTCGTTCGactcttttccttctttctttcttttttcgtcAATGTGACCTATGTGTGCTGAAGTCAgcagacgaaaaaaaaaaacgaaactaAATTTAACCCTCTGAGTACGCCCAAGCACTTGTACATTATAACAGATCATCGTCAGAAAATAGAGAACATGAAATGATATGATAAAAGTCAGTAAATTGGATCAGTAAATTCAGTAATACCTTATTCGTATTGGAATACTCAATTTACATTGGGTTCTGATTACTTACGAAAACACaaaacatgatatatatatatatacataatacatgaaacattaaataagcaaacaagAAACAAAATAGAGATCAAAGAACGGAACAGAAGATGATACCATACCTGAGGTTCCAACTGTTCGAAGTGGCTTCTGACTGATtctcactgcaaaaaaaaaaacaacaacaaaaaaaacgtgCGAATCCAAACTGCAGTCTTTCAGTTCCTTGAAAATCAGGGGCCTTTATGAATTCAGGTCGTTTaaaaaaggtgtaaaaatgtgtacatATAAAAAATGGTATAAACTAATTTCTGTCTAAATTATgcatcattttatatttttaatttaagagGAGTATGACTATCTACTGGTGCACAATATATGAAGACATTAATGAAATTGTTTTGCACAAtagttttataaatgttatttaatcaGATGAtgtgaaaatgagagaaaaaaaggagaaaaaaaaaataaaacacgaATAACATcctaaacttttattatttccaCCTCGTGCTCAAAGGGTTAAACTTCTTGTACAAGACGATACTTGTTCCATCGTTTCttgaacatttaaaatgttgtacAAAAGATGCTACTTTATAACGCAAGGAGGAGGAATTCCACAGTGTAACCTATTATTTATAAGCACTCTCGGTTGTTGTTTCATATTGTAGAATGCCTTTTTGATTGGTAACTTTTATGTTGTTCTGTCTGATTACTCTCCCATGATTCCGCACTGCagctttatctatttttttgttgtttttttgttctttattccttttttttgtttcatttcatttcatttgggATATGAAAGGTAACTATGGTTACCTTGCCTCCGATTGACACTTCTGCTACATTTTTGGCAGTTAACTTACTGAAATAACTAACAGCTGCCAGTGAATGGAAATctaatgtgtaaaatattggCATGTAAACAGCACAGGCACTGTTATGCATTCTGTGCCgtgattctctttttttttccttgttgtTGACAATGAAGCACCCATTATATGACTTCATATAACCTTTTTTTCTACTGcagcattaaaatgaaaatgttttggggttttttttgcaataa

Function

symbol description
tshz3b Predicted to enable DNA binding activity and DNA-binding transcription factor activity, RNA polymerase II-specific. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within negative regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in several structures, including brain; olfactory system; pharyngeal arch 3-7; posterior neural keel; and posterior neural tube. Orthologous to human TSHZ3 (teashirt zinc finger homeobox 3).
tshz3 Enables chromatin binding activity. Involved in negative regulation of transcription, DNA-templated. Located in nucleoplasm and plasma membrane.

NR:

description
teashirt homolog 3

GO: NA

KEGG:

id description
K09236 TSHZ; teashirt

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007246944.3 True 6625 mRNA 0.48 3 3657859 3745126

Neighbor

gene id symbol gene type direction distance location
LOC103044644 NA coding upstream 2076923 1579110 ~ 1580936 (+)
LOC111188231 NA coding upstream 2095830 1558494 ~ 1562029 (+)
traf6 traf6 coding upstream 2154879 1492578 ~ 1502980 (+)
LOC103021976 LOC108438545 coding upstream 2228620 1419036 ~ 1429239 (+)
LOC103044962 LOC108259203 coding upstream 2244264 1384340 ~ 1413595 (+)
LOC103030650 nr1h3,LOC107689968,LOC107664377,LOC107755109 coding downstream 1117070 4862196 ~ 4894687 (+)
muc15 NA coding downstream 1386767 5131893 ~ 5144884 (+)
dis3l dis3l,LOC107740444,LOC107663953,LOC107664394,LOC107755103 coding downstream 1401843 5146969 ~ 5167298 (+)
LOC103028443 crybgx,LOC103028443,LOC105906490,LOC103368872,LOC108259467,LOC102304589,LOC102204928 coding downstream 1453672 5198798 ~ 5205566 (+)
LOC103027811 smad3,smad3a,LOC108430827,LOC103353199,LOC107740443,LOC107553101 coding downstream 1582391 5327517 ~ 5373340 (+)
G299700 NA non-coding upstream 100019 3557431 ~ 3557840 (+)
G299694 NA non-coding upstream 116825 3540335 ~ 3541034 (+)
G299685 NA non-coding upstream 261779 3395631 ~ 3396080 (+)
G299679 NA non-coding upstream 297306 3360289 ~ 3360553 (+)
G299670 NA non-coding upstream 428849 3228619 ~ 3229010 (+)
G299744 NA non-coding downstream 44138 3789264 ~ 3789471 (+)
G299749 NA non-coding downstream 113456 3858582 ~ 3858996 (+)
G299765 NA non-coding downstream 258695 4003821 ~ 4160582 (+)
G299774 NA non-coding downstream 382116 4127242 ~ 4203962 (+)
G299856 NA non-coding downstream 836026 4581152 ~ 4581412 (+)
LOC103025330 si:ch211-186j3.6,LOC108442966,LOC108259100,LOC106562040,LOC105022727,LOC107696606,LOC107572394,LOC107712488,LOC107680491,LOC107565684 other upstream 729997 2398717 ~ 2927862 (+)
G299477 NA other upstream 1453604 2187333 ~ 2204255 (+)
LOC103047296 NA other upstream 2090781 1562838 ~ 1567078 (+)
G299236 NA other upstream 2333005 1324420 ~ 1324854 (+)
G299226 NA other upstream 2439753 1217809 ~ 1218106 (+)
madd madd,LOC107755105 other downstream 1157508 4902634 ~ 5027421 (+)
G299903 NA other downstream 1423500 5168626 ~ 5170108 (+)
LOC111191166 NA other downstream 1508448 5253574 ~ 5256311 (+)
LOC111191164 NA other downstream 1798686 5543812 ~ 5548569 (+)
LOC111191158 skor1a,LOC108430798,LOC108259147,LOC107563488,LOC107663943,LOC107553092 other downstream 1805967 5551093 ~ 5556428 (+)

Expression


Co-expression Network