LOC103026906 (pias1a,pias1b,LOC108430823,LOC108259600,LOC107553093)


Basic Information

Item Value
gene id LOC103026906
gene name pias1a,pias1b,LOC108430823,LOC108259600,LOC107553093
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172830.1
NCBI id APWO02000048.1
chromosome length 5891159
location 5564259 ~ 5652806 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022665220.1
CTGCGCTGAGGAACTAGAAGATGGCGGAGAGTGCGGAACTGAAGCAAATGGTGATGAGCCTGCGAGTATCGGAGCTGCAGGTTCTCCTGGGTTACGCAGGGAGGAATAAACATGGCCGAAAGCACGAGCTGCTGACCAAAGCGCTGCACCTGCTGAAGGCCGGCTGCAGCCCCGCGGTGCAGATGAAGATTAAGGAGCTGTACAGGCGCCGCTTCCCCACCAAGCTGGTGTCCCCGGCCGAGCTGGCCCTGCCGGGGGTCCACCCTGCTGCCACCTCGCTGCCCGCCGGACTCACCCAGCTGGCCTTCGACGGGCACGGGGCCACACCATCCCCCCTGCTGCCCATCTCGCTCCTCGGACCCAAGCATGAGCTGGGCCTGCCCCACCTGCCCTCCAACCTCCACCCCGTACACCCAGACGTCAAGCTGCAGAGACTACCCTTCTACGACGTGCTGGACGAACTCATCAAACCCACCAGCCTCGCTTCAGACAACAGTCAACGCTTTCAAGAAACGTGTTTCGCTTTCGCATTAACGCCACAGCAAGTCCAGCAGATCAGCGGCTCAATGGACATCTCCGGGACCAAATGTGACTTCACGGTACAAGTACAGTTACGgtTTTGCTTATCAGAAACCAGCTGTCCACAGGAAGACCACTTTCCTCCGAACCTCTGTGTAAAAGTCAACGGGAAGCCATGTAATCTTCCGGGCTACCTTCCTCCTACCAAAAACGGAGTCGAACCAAAGCGTCCCAGCAGACCAATCAACATTACCTCACTGGTCAGACTGTCCACCACCGTCCCCAACACCATCGTTGTGTCTTGGACATCAGAGATTGGAAGGAGTTACTCTATGGCGGTGTATCTGGTGAAGCAGCAAACGTCCACAGCGCTGTTACAGAGACTCCGAGCCAAGGGCATCAGAAACCCAGACCACTCCAGAGCGCTCAtcAAAGAAAAATTAACAGCAGACCCCGACAGTGAAATCGCCACAACCAGTCTACGAGTGTCGTTACTGTGTCCGCTGGGGAAGATGCGGCTGATGATTCCGTGCCGGGCGGTGACGTGTTCACACCTGCAGTGTTTTGACGCCACGCTCTACATCCAGATGAACGAGAAGAAGCCCACCTGGGTGTGTCCCGTCTGTGACAAGAAGGCACCCTATGAACATCTCATCATTGACGGgtTGTTTATGGAGATTCTGAACAGCTGTGTAGACTGTGATGAGATTCAGTTTAAAGAGGATGGCAGTTGGGCCCCCATGAGGTCGAAAAAGGAAGTGCAGGAGGTGTCGGCCTCGTGTAACGGAGTAGACGGCGGCTGTCGGACATCAGTATCCGAGCAGAAATCCAACTCACACACGAACAGCAACAGTAAGAAAGTGGAAGTGATCGATCTGACGCTCGACAGCTCGtcagaggatgaggaggaggaagagccGCCTCAAAAACGAAGCTGCCCCTCGCTGTCGCCCAGCTCCCCACAGATGAATAAAGGAGTACTGAATCTATGTACGCAGCCGTCTCCAGTAAGTCGAACTCCCAGTATGCCTCAAGTGGAGACCAACTACATCCCTCCACCACCCCCACTCATACAGGACTACCGGCACTACTACCCTACTCCCAACGACCTGTCAgATCTgaactttttctcatttttacaaGGAGAGAATCATCAGcaCTATAACATGGTGATGGCGGCGGCCGCCTCGGCGTCGGAAGACCACGACCTCCTCCTGAACCGTTTCCTGCCCTACAGCTCCTCCCAGCTCTTTCTGGACCCGCCCAGCACCCCGGTGAGCAGCGGCGCCGTCCACGCCCCCGTCAACGTCAAccgcagcaacagcagcagctccagcgGCAGCCTGGTGTCGTCCAGCAGCCTGAGAGACGCTCACGGCCTGTCCGCCGTCCAGCGCTCGGCCTCGGACACCGCCAGCGCCATGGCCTCCGCCATCTACGGCTCCATCCCCGACGTTATCTCCTTAGACTGATCCACcacctctcttttcctcttctctcctctcttcttctgttctgttctgttcctgCTGTTCCTCTAACACGACAGAACCAAACCCACTGAACGGTGATGATGAGATCATCAAGACTTTGGCGGGAAAAACAgagatgttgtttttttttctttttt

Function

symbol description
pias1a Predicted to enable SUMO transferase activity and zinc ion binding activity. Predicted to be involved in protein sumoylation. Predicted to be located in nuclear speck. Orthologous to several human genes including PIAS1 (protein inhibitor of activated STAT 1).
pias1b Predicted to enable SUMO ligase activity and transcription coregulator activity. Predicted to be involved in protein sumoylation and regulation of transcription by RNA polymerase II. Predicted to be located in nuclear speck. Orthologous to several human genes including PIAS1 (protein inhibitor of activated STAT 1).

NR:

description
PREDICTED: E3 SUMO-protein ligase PIAS1-like

GO: NA

KEGG:

id description
K04706 PIAS1; E3 SUMO-protein ligase PIAS1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022665220.1 True 2149 mRNA 0.56 15 5564259 5652806

Neighbor

gene id symbol gene type direction distance location
map2k5 map2k5 coding upstream 30893 5441540 ~ 5533366 (+)
LOC103027811 smad3,smad3a,LOC108430827,LOC103353199,LOC107740443,LOC107553101 coding upstream 190919 5327517 ~ 5373340 (+)
LOC103028443 crybgx,LOC103028443,LOC105906490,LOC103368872,LOC108259467,LOC102304589,LOC102204928 coding upstream 358693 5198798 ~ 5205566 (+)
dis3l dis3l,LOC107740444,LOC107663953,LOC107664394,LOC107755103 coding upstream 396961 5146969 ~ 5167298 (+)
muc15 NA coding upstream 419375 5131893 ~ 5144884 (+)
LOC103026610 LOC103026610,LOC108430825 coding downstream 6792 5659598 ~ 5660875 (+)
LOC103042267 LOC108430822 coding downstream 36980 5689786 ~ 5814523 (+)
G299932 NA non-coding upstream 28674 5521512 ~ 5535585 (+)
G299938 NA non-coding upstream 40177 5523235 ~ 5524082 (+)
G299934 NA non-coding upstream 55671 5476060 ~ 5508588 (+)
G299925 NA non-coding upstream 186172 5370950 ~ 5378087 (+)
LOC111191167 NA non-coding upstream 312847 5251022 ~ 5251412 (+)
G300097 NA non-coding downstream 125331 5778137 ~ 5817187 (+)
G300111 NA non-coding downstream 166762 5819568 ~ 5819974 (+)
G300112 NA non-coding downstream 171173 5823979 ~ 5824250 (+)
LOC111191158 skor1a,LOC108430798,LOC108259147,LOC107563488,LOC107663943,LOC107553092 other upstream 7831 5551093 ~ 5556428 (+)
LOC111191164 NA other upstream 15690 5543812 ~ 5548569 (+)
LOC111191166 NA other upstream 307948 5253574 ~ 5256311 (+)
G299903 NA other upstream 394151 5168626 ~ 5170108 (+)
madd madd,LOC107755105 other upstream 536838 4902634 ~ 5027421 (+)

Expression


Co-expression Network