LOC103023516 (brsk2b,LOC108444143,LOC107600443,LOC107730259)


Basic Information

Item Value
gene id LOC103023516
gene name brsk2b,LOC108444143,LOC107600443,LOC107730259
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172830.1
NCBI id APWO02000048.1
chromosome length 5891159
location 865233 ~ 950940 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022665233.1
ATGTCGGGAGCTGGCGCGAGGTGCGGCGCTTCAGTGCGTTTCGCTGCTCGTATTGCTCGCGTTGCTGACTGTATACTGAGTAATGTGGGCAGTCAGCTCCAAGCTGGACTGACCATGCAGTCTCAGCCTATCCTATCCTCTGCGTGCCCGTCCGACTGGCCGAGGCTCCAGCAGttatctctctgtctctctctctttctctcgctctctttcactCTGCAGGTGGAGAGGGAAATAGCCATTCTGAAGCTCATAGAGCATCCTCATGTATTGAAGTTGCACGATGTCtatgaaaataagaaatatttATATTTGGTTCTAGAGCACGTTTCAGGAGGAGAGCTGTTCGATTATCTGGTAAAGAAGGGCAGGTTAACACCCAAAGAGGCTCGAAAGTTCTTCAGACAGATCATCTCTGCACTGGACTTCTGCCACAGCCATTCAATATGcCACAGAGACCTGAAGCCGGAGAACCTGCTGCTGGACGAGAAGAACAATATCAGGATAGCAGATTTCGGAATGGCTTCTTTGCAGGTTGGAGACAATCTGTTGGAAACAAGCTGTGGCTCTCCGCACTACGCCTGCCCAGAGGTGATCAGGGGGGAGAAGTATGATGGGAGGAAAGCAGATGTCTGGAGCTGTGGGGTCATTCTCTTCGCACTTTTAGTGGGTGCTTTGCCATTCGACGACGATAACCTGAGGAACCTGCTGGAGAAGGTGAAGCTGGGGGTTTTCCACATGCCTCACTTCATCCCGCCAGACTGTCAGAACTTGCTGAGGGGAATGATCGAAGTGGACGCAACCAAAAGACTAACGTTAGAACAGATACAGAAGCACACGTGGTACATAGGAGGGAAGAACGAGCCGGAGCCAGAGCAGCCCGTCCCGCGAAAAGTGGCCATCCGGACGCTGCCCTCGGCCGAGGACATCGATCCAGACGTACTGGAGAGCATGCACTCGCTCGGCTGCTTCAGGGACAAGAACAAGCTGATGAAAGACCTGCTGTCGGACGAtGACAACCAAGAAAAGATGATTTACTTCCTGCTGCTGGACCGTAAGGAGAGGTATCCCAGCCACGAGGACCAGAACCTTCCCCCTCGCAACGAGATCGACCCTCCCAGGAAGCGGGTCGACTCTCCGCTGCTGACCAGACACAACAAGAGGAGGCCAGAGAGGAAGTCCATGGAGGTTCTGAGCGTGACTGAGGGAGGTTCTCCGGTACCGGTCCGACGAGCCATCGACATGAGCCAGCACGGACAGAGGTCGAGGTCCATCAGTGGAGCTTCATCCGGTCTGTCCACCAGTCCACTCAGCAGTCCACGGCCTGTGAGACGCTTTTTTATTCCCCCACAATCCTCGGAGCTCACGCAGTCGCCCAATCACAGCCCCAGCCACTCGCCCCGGGCCAATGGCACCGCCCCCCACTCGCCCTGCGCCTTCCATCCAAAGACCGGAGCCCTTCAGCCCAACAACAAAACCCAGACCCTTCCAGCAAAACCCAAAGTTGCCGAGAAGCCCCTCCAGAGCACCATGTCCAACCCCCTCCCCAACACCACGCCCACGCCCTCCGCCGCCAAATCCGAGCCTTCCACGCCCTCCACGCCCACCCACCCCCTGTCCCCGTCCATCACCAACAGCCCCAAGGTGCGCAGGCCGCCCCTTACTGTTCCCCCCAAGCTCTCTGTTCCACTTTCTCAGGCACCGCCCCTCTCGCCCATCCGgctacaccaccaccacctgcaCCCGCTGGCCGGGACTGACCACAACGGCAAATCTATCCCCGCTGTACAGGTCACCCCTCACCCTTCCCCCCGGGGCAGCCCCCTCCCGACCCCCAAGGGAACGCCCGTCCACACGCCCAAGGAGAGTCCGGCCGGCACCCCCAGCCCCACGCCGCCCCCCAGCCCGTCCATCGGGGGCATGCCCTGGAGGACACGCCTCAACTCCATCAAGAACAGCTTCCTCGGATCGCCGCGGTTCCACCGCAGAAAACTGCAAGTGCCCACACAAGAGGAAATGTCCAGCCTAACGCCGGAGTCTTCCCCCGAacTTGCCAAAAAGTCCTGGTTTGGTAACTTCATTAATCTAGAGAAGGAGGAGCAGATCTTCATAGTGATTCAGGACAAACCTCTGAGCTCCATCAAAGCGGATATAGTCCACGCCTTTCTCTCGatcccCAGTCTCAGTCACAGTGTGGTGTCTCAGACGAGTTTCCGGGCGGAGTATAAATCCACCGCCGGCCCCACCGTCTTCCAGAAACCCGTAAAGTTCCAGGTGGACATCACCTACACGGAGAGCACGTCGGCCACCAAGGAGAACGGCATCTACTCCGTCACCTTCACCCTGCTCTCAGGTCCCAGCCGACGCTTTAAACGAGTGGTGGAGACGATTCAGGCTCAGTTGTTAAGTTCACACGATCAGCCGGCCGTCCAGCAGCTGTCCGGCAGCCCATTGAGTAGCTTCTTTGACGTAATTAAACAGCTCTTTTCAGACGAGAAGAACGGGCAGGTGCCCCACGCCGCGGGCACGCCCAAGCACGGTGCCAACAGCAAGAAACACGAGTCCGACTCTAATACCTCCAAATGCCCAGCGGGCAAAGACAAAGCCAAGGTGGCACCTTCAGTTGGGACACAGGAGCAGCCTTAAGTAGAGACGGAAATGTCCTGATCTGATCTGAATACGTAAAATAAGCTTTTGGCTCAGTTGAGTCGGACACTAAACGAACTGttttggtttttatttttacgctGGAATGATTACTGAGTATTACATCACGAGTCCATACTTTACACAAGACACgtacatatacataaacacaaacagtgTTGAGTGCTTTAAAGTAGGGCTGTACGAAATGGACGGTATGAAAATCGCAATATCTCCTATTTCGCAACATTGATATAAAATTGCCTTGGTTGCACTCATTTTTGCTTATTTACAAGCTTATGAACTATAATGTTGGCCCACCCTCCGCAGctacaaaagtacaaaaaaaactcttctgggaaggctttccacgaggtttaggagtgtgtttatgggaatttgGATGAGACACAGATGTTGGACGAAAAGGCTCTGTTCTAATTCATTCCAATGGTGTTCTATCAAGTTCTTGCACACCAAACTCATAAAGACAGCTCATCCAGGTCTTTATGGAGCTTGCTTTGTCTACAGGTGCTTAGTAGTCATGTTGGAACAGGAATTAGCCGTCCATAAACTGTTTGAGCAAAGTTGGGGCATTAAGATTGgctgaagcattaagagttAATTTCACTGGAACTGGAAGGGGCTAAACCCAactcctataaaaaaaaaaaaaaaccctgcgcATAATCCCTCCTCCACCGAACTTTACACTTGCaggcacaatgcagtcagacacGTAACGTTTTTCTGGCCAATGCCAAACCCTTGGAGAAGCTTGATTGGCCACTCCAGAGAACGTACCTCTACTTTTCTAGAGTTCAACATCCCTACGTTTTGCTTTGCACGCTCTGCTCCTCAGTATTCGTGTATTGTACAGCCCTACTTTAAGCACACGTTTGTTTGTATTACTctgttgctgtttttctttagttttctgCATCTCCTGTGCATTTGTGATGGTTTTTGCCCATTTCTGCTGCCAGGGATAATCCAGAAATCGTGTTAGAGGCCAGCCGATTGGTGTACAGTATGTCGACGGACGAAGGCACATTACACAGCAAGTACAAGCTACAGATGGACGCTCCTCAACGCTGACACTATACGAGAACATATATATGAACCACGTAAACCACCCCGAAAACTCAACTCCGCCCAGATGCGTCTACAGATGTTTAAACGTCCACTGGAAGCCAAACTTCTGAAGAATTGTGAAGAAAAAgccttaagaaaaaaaaaaa

Function

symbol description
brsk2b Predicted to enable ATP binding activity and protein kinase activity. Predicted to act upstream of or within protein phosphorylation. Orthologous to human BRSK2 (BR serine/threonine kinase 2).

NR:

description
PREDICTED: serine/threonine-protein kinase BRSK2-like

GO: NA

KEGG:

id description
K02515 HSL1; serine/threonine-protein kinase HSL1, negative regulator of Swe1 kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022665233.1 True 3887 mRNA 0.52 18 865233 950940

Neighbor

gene id symbol gene type direction distance location
LOC103040103 hrasb,hras,LOC107596435,LOC103357265,LOC107562835 coding upstream 163816 689257 ~ 701417 (+)
LOC111191160 NA coding upstream 366231 483770 ~ 499002 (+)
LOC103024613 dh12b,hsd17b12b,LOC108414037,LOC107757588,LOC107701268,LOC107695363,LOC107730274 coding upstream 604212 232806 ~ 261021 (+)
ttc17 ttc17,LOC107600454,LOC107695362 coding upstream 674745 167671 ~ 190488 (+)
vps33b vps33b,LOC106587690 coding upstream 711485 138255 ~ 153748 (+)
LOC111191156 NA coding downstream 275652 1226592 ~ 1229189 (+)
LOC111191157 NA coding downstream 386831 1337771 ~ 1340796 (+)
LOC103044962 LOC108259203 coding downstream 433400 1384340 ~ 1413595 (+)
LOC103021976 LOC108438545 coding downstream 468096 1419036 ~ 1429239 (+)
traf6 traf6 coding downstream 541638 1492578 ~ 1502980 (+)
G299181 NA non-coding upstream 2715 862253 ~ 862518 (+)
G299169 NA non-coding upstream 14150 850685 ~ 851083 (+)
G299079 NA non-coding upstream 70119 794373 ~ 795114 (+)
G299071 NA non-coding upstream 93530 770120 ~ 771703 (+)
G299072 NA non-coding upstream 94630 770299 ~ 770603 (+)
G299199 NA non-coding downstream 45828 996768 ~ 1044156 (+)
G299205 NA non-coding downstream 101183 1052123 ~ 1061675 (+)
G299214 NA non-coding downstream 184363 1135303 ~ 1189155 (+)
G299225 NA non-coding downstream 260874 1211814 ~ 1212043 (+)
G299227 NA non-coding downstream 267534 1218474 ~ 1218905 (+)
G299046 NA other upstream 158409 705160 ~ 706824 (+)
G299000 apip other upstream 394613 462414 ~ 470620 (+)
prc1 prc1 other upstream 699136 154965 ~ 166097 (+)
G298859 NA other upstream 786553 78480 ~ 78680 (+)
LOC111191161 NA other upstream 798046 52791 ~ 67187 (+)
G299226 NA other downstream 266869 1217809 ~ 1218106 (+)
G299236 NA other downstream 373480 1324420 ~ 1324854 (+)
LOC103047296 NA other downstream 611898 1562838 ~ 1567078 (+)
G299477 NA other downstream 1236393 2187333 ~ 2204255 (+)
LOC103025330 si:ch211-186j3.6,LOC108442966,LOC108259100,LOC106562040,LOC105022727,LOC107696606,LOC107572394,LOC107712488,LOC107680491,LOC107565684 other downstream 1447777 2398717 ~ 2927862 (+)

Expression


Co-expression Network