LOC111191157


Basic Information

Item Value
gene id LOC111191157
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172830.1
NCBI id APWO02000048.1
chromosome length 5891159
location 1337771 ~ 1340796 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022665235.1
TATgctatagagtgaacagtattcAGCACACAGCGAATACAGAGTTACTGCATCTTAGAAACTggtgcttgttcttacagcctacaacatgtAGGCCAGACAGGTTTATATGGTCATAAATGTTCTCCTAACCTTAAGTACTGTATCATGTTCATGCTCCTCCATGCCCGCCGCTGCGGTGGGACTGGTTCCCGGGTCAGGAGGGCGTGCCCGTACCCGGAGGTGTTCTGGGACTCGGAGCTGAGGGCGGAGGGCGAGCAGTGGAAGGGCACCGCCGCCTGCGTCGCTATCGGCTTCCTGTTCGCTCTGACTCTGGGATTAATCTACTGGCAGGTGGTGGATCAGCCCCACCTGCACTGGATGGTGCCGGGCCGGTTCTCTGGGCTGTTCTGGGACTCTGGCAGGAGCTCTCTGGTGTTCAGGACGCTCTCTGAGGACAGTCCCGTGCTGGACGTCTCTGTTGGACCCGTTGGAGACGCTGATTCTCATCTGCATTTCTGGGGGAGCCACAGGAACCGGTGCCGGCCCGACTCCAGCAGGTTCTGTACGGAGTGGGAGGGGCAGCTGGCGGTGGGTGTAGGGGTGGAGCTGGATgaggagatggaggtggagtGCTACAATATCAGCTGGACGCCTCTAAACTGCCGTCTTCATATTAAGCACTGTTTCTCTATGGAGAGTGTGTGGTGGTATGGTGGAGGGAGCGTCCGGCCGCAGAGGTGGCCTATAAACCCCGTGAACGTCCCACTGCAACCCTTCACCCCCACCGACTCCACCCACCACCCCTCAGGGTACGGCTCAGTGCTGGAACACCAGCTCTACGGATCATCAGGTGTAGCAGTGCTGCTGTCTCCAGATGTTCTCCTGAATGTTGGTATAGAGAGAGATCATCAGGTCTGTGTTGAGCCTCGGCGAGCTCAGCCTCTGCACTACAGAGTTTGCGTAGGTCACAATCTTAAAGCCGTTCACCAGAAAATAGCTCATGATCGCAGCCACAGCTCACCACAGCTCCCCGACACAACCATCCTaaggtaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022665235.1 True 1035 mRNA 0.57 3 1337771 1340796

Neighbor

gene id symbol gene type direction distance location
LOC111191156 NA coding upstream 108582 1226592 ~ 1229189 (+)
LOC103023516 brsk2b,LOC108444143,LOC107600443,LOC107730259 coding upstream 386831 865233 ~ 950940 (+)
LOC103040103 hrasb,hras,LOC107596435,LOC103357265,LOC107562835 coding upstream 636354 689257 ~ 701417 (+)
LOC111191160 NA coding upstream 838769 483770 ~ 499002 (+)
LOC103024613 dh12b,hsd17b12b,LOC108414037,LOC107757588,LOC107701268,LOC107695363,LOC107730274 coding upstream 1076750 232806 ~ 261021 (+)
LOC103044962 LOC108259203 coding downstream 43544 1384340 ~ 1413595 (+)
LOC103021976 LOC108438545 coding downstream 78240 1419036 ~ 1429239 (+)
traf6 traf6 coding downstream 151782 1492578 ~ 1502980 (+)
LOC111188231 NA coding downstream 217698 1558494 ~ 1562029 (+)
LOC103044644 NA coding downstream 238314 1579110 ~ 1580936 (+)
G299232 NA non-coding upstream 29920 1307614 ~ 1307851 (+)
G299229 NA non-coding upstream 42699 1294783 ~ 1295072 (+)
G299228 NA non-coding upstream 94295 1242921 ~ 1243476 (+)
G299227 NA non-coding upstream 118866 1218474 ~ 1218905 (+)
G299225 NA non-coding upstream 125728 1211814 ~ 1212043 (+)
G299242 NA non-coding downstream 4708 1345504 ~ 1399995 (+)
G299243 NA non-coding downstream 5869 1346665 ~ 1348801 (+)
G299251 NA non-coding downstream 24643 1365439 ~ 1367927 (+)
G299265 NA non-coding downstream 60635 1401431 ~ 1408618 (+)
G299266 NA non-coding downstream 69190 1409986 ~ 1416618 (+)
G299236 NA other upstream 12917 1324420 ~ 1324854 (+)
G299226 NA other upstream 119665 1217809 ~ 1218106 (+)
G299046 NA other upstream 630947 705160 ~ 706824 (+)
G299000 apip other upstream 867151 462414 ~ 470620 (+)
prc1 prc1 other upstream 1171674 154965 ~ 166097 (+)
LOC103047296 NA other downstream 222042 1562838 ~ 1567078 (+)
G299477 NA other downstream 846537 2187333 ~ 2204255 (+)
LOC103025330 si:ch211-186j3.6,LOC108442966,LOC108259100,LOC106562040,LOC105022727,LOC107696606,LOC107572394,LOC107712488,LOC107680491,LOC107565684 other downstream 1057921 2398717 ~ 2927862 (+)
madd madd,LOC107755105 other downstream 3561838 4902634 ~ 5027421 (+)
G299903 NA other downstream 3827830 5168626 ~ 5170108 (+)

Expression


Co-expression Network