LOC111188231


Basic Information

Item Value
gene id LOC111188231
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172830.1
NCBI id APWO02000048.1
chromosome length 5891159
location 1558494 ~ 1562029 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022665256.1
CTGAGCTCCGGGGTCTGCAGGGTCTTCAGTGCAGAAACAACAGCAGAGTGATACAGATATGTTTATTGGATTTAATCAGATACAGactTGAATTCCgaatttttttactttcctaCCTGGTTAAAAATGAAGGTGGAGAACGAGGGGAAGAACACAGAGATGGAGAATAAGGTGAGGAACATGGAGGTGGAGAACGAGGGGAAAAACAGGGAGGTGGAGAACGAGGGGAAAAACAAGGAGATGGAGAACGAGGGGAAGAACAAGGAGATGGAGAATGAGGGAAAGAACGTGGAGGTGGAGAACGAGGGGAAGAGCATAAGAATGGAGAACGAGCAAAAGAACATGAAGATGGAGAATGAGGGAAAGAACATAGAGATGGAGAACAAGAGAAAAGAGATGGAGATGAAGAACGAGGAAAATAACAAGGAGATGGAGAACGAGGGGAAGAACATGGAGGTGGAGAACGAGGAGAAGAACATGGCATCTGAAGATCTCTCCAGTGATCAGCAATCATCCTCTTCTACATCTTTTGATCAAATTCTGGAAAATTTAGACGGTCATAAATCTCACCTCTGTTTAGACTGTGGGAAAACTTTTTCTTCAGGtggtaatctcaaaaaacacaaaattattcacactggagagagacCGTATAACTGTTTAGACTGCGGGAAGAATTTTAACTGCCAGGCTACACtaaaactgcatcagcgcattcacactggagagaaaccgtattactgctcagactgtgggaacagTTTCAGTACTCAGAGTAATCTGCATCGACACCTGCGcactcacactggagagaaaccgtttcagtgttcagactgtgggaagagttttacgcGTCAGAACAGTCTCAAAGAACACCAGAACATTCActctggagagaaaccgtataaCTGCCCAGAGTGTGGACAGAGTTTTTCTCACGAAAGAAATCTACACCAACAtctgcgcattcacactggagagaaaccgtttcagtGCTCAGATTGTGGTAAAAGTTTCTCTCAGTTGTGTaatctccaacaacaccagcgcgttcacactggagagaaaccgtatcactgctcagagtgtgggaaaaGTTTCAATCGTCAAAATACTCTACATCAACACCAGCTcgttcacaccggagagaaaccatTCGACTGcccagagtgtgggaagagttttaacaAACAGAATAATCTACAACAGCAtctgcgcattcacactggagagaaaccgtatcactgctcagaatgtggaaagagttttacgaAACAGAAAAATCTACaactacaccagcgcattcacgcTGAGGAAAAACTCTAACCCTGTTCAGactgtgtaaaaaaagattactcatacccactcattaggacccaaCGCCTCTTTTGTTGAGCTCCTGCTGATGCTATAGCATTGCCGAGTTGCATCATAGCGCGCTAACGCTCGAAGGAAAGcgtagcgactcggttctgatacatcagctcacagacgcagccttgtgctgattcacATCACCATCCATCATtataggagtgatgaggggataaagagaagagcgccatctactgtacccaaccagagagagagcaaggacagttgcgctctctcagggctctggcagtagatggcaagctgcatgactgggattcgaactggTGATTTCCTGATCATAGTTGCAGTGCTTTAggctgctggaccactcggagccccccATAATCGGGGTAATCTACAACAGAAAACTGTCATGTTCAATAATTGTTCCTGTGTTTTTGCGTCCCAAAAAACTCTggaacttttttgttttaaataaacaaaactatcaAAACta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022665256.1 True 1831 mRNA 0.45 3 1558494 1562029

Neighbor

gene id symbol gene type direction distance location
traf6 traf6 coding upstream 55514 1492578 ~ 1502980 (+)
LOC103021976 LOC108438545 coding upstream 129255 1419036 ~ 1429239 (+)
LOC103044962 LOC108259203 coding upstream 144899 1384340 ~ 1413595 (+)
LOC111191157 NA coding upstream 217698 1337771 ~ 1340796 (+)
LOC111191156 NA coding upstream 329305 1226592 ~ 1229189 (+)
LOC103044644 NA coding downstream 17081 1579110 ~ 1580936 (+)
tshz3 tshz3,tshz3b,LOC108429148,LOC107570485,LOC107556246,LOC107696607 coding downstream 2095830 3657859 ~ 3745126 (+)
LOC103030650 nr1h3,LOC107689968,LOC107664377,LOC107755109 coding downstream 3300167 4862196 ~ 4894687 (+)
muc15 NA coding downstream 3569864 5131893 ~ 5144884 (+)
dis3l dis3l,LOC107740444,LOC107663953,LOC107664394,LOC107755103 coding downstream 3584940 5146969 ~ 5167298 (+)
LOC111191159 NA non-coding upstream 49105 1489671 ~ 1509389 (+)
G299266 NA non-coding upstream 141876 1409986 ~ 1416618 (+)
G299265 NA non-coding upstream 149876 1401431 ~ 1408618 (+)
G299242 NA non-coding upstream 158499 1345504 ~ 1399995 (+)
G299437 NA non-coding downstream 158893 1720922 ~ 1722099 (+)
G299438 NA non-coding downstream 160205 1722234 ~ 1723281 (+)
G299458 NA non-coding downstream 270009 1832038 ~ 1832901 (+)
G299472 NA non-coding downstream 284210 1846239 ~ 1846495 (+)
G299475 NA non-coding downstream 292556 1854585 ~ 1854786 (+)
G299236 NA other upstream 233640 1324420 ~ 1324854 (+)
G299226 NA other upstream 340388 1217809 ~ 1218106 (+)
G299046 NA other upstream 851670 705160 ~ 706824 (+)
G299000 apip other upstream 1087874 462414 ~ 470620 (+)
prc1 prc1 other upstream 1392397 154965 ~ 166097 (+)
LOC103047296 NA other downstream 809 1562838 ~ 1567078 (+)
G299477 NA other downstream 625304 2187333 ~ 2204255 (+)
LOC103025330 si:ch211-186j3.6,LOC108442966,LOC108259100,LOC106562040,LOC105022727,LOC107696606,LOC107572394,LOC107712488,LOC107680491,LOC107565684 other downstream 836688 2398717 ~ 2927862 (+)
madd madd,LOC107755105 other downstream 3340605 4902634 ~ 5027421 (+)
G299903 NA other downstream 3606597 5168626 ~ 5170108 (+)

Expression


Co-expression Network