ttc17 (ttc17,LOC107600454,LOC107695362)


Basic Information

Item Value
gene id ttc17
gene name ttc17,LOC107600454,LOC107695362
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172830.1
NCBI id APWO02000048.1
chromosome length 5891159
location 167671 ~ 190488 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022665291.1
GTTACCCGGATGTTAGGGAGAGGGATGGAGGGGAAGGAAAAAATGGCAGCGCGGAGCTGCAGCGGAGTCACAGCGCGGACCCGGCCCGCCGGCTTCACCCGCCACACAGCCCCCGTCACCCGGCACACCGCCGCCGCCACCACCGCGCTCACCCCCCACACCGCCggcctgctgctgctctgcGCCATGCTGACCCAGCCCGCCCGGGCCACCACTCACTGGGTCGTTACTGAGGACGGGAagatccagcagcagGTGGATTCTCCGCTGAACCTGAAACATCCTCATCACTTAGTTCTGTTCATGCAGCAGGAGACCCGGGTCAACTACCTCAAGAACCTAGAGAAGCAGCTGGTGGCTCAGAAGATCCATATCGAGGAGAACGAGGACCGGGACACCGGATTAGAACAGCGGCACTATAAAGAGGATCCGGACTGCGTGACGGCGAAGGTTCCGCTGGGGGATCTGGATCTGTACGATGGAACCTTCATATCTCTGGAGAGCAAAGGCATCAATCCTGAAGATTATGTGGATTCGGTGCTGCCGCTGCCCTCAGATCTGGAGAAACCGGACTGTGCAGAAATTCTGGAGCTTCCTTACAGCATCCACGCGTTCCAGCACCTACGGgGAGTTCAGGAAAGAGCGAATCTCACCTCTCCTTTACTGTCTAAAGACGACCCGATATTCGCTTCTCTATCCCATAAGCTGGGTCAGCGACTGGACGAGGTCGGGCACAGGATACAGCAGGGTCTGCTGAGGAACTCCTCCTCCTGGGTTCTGTATGATCTGGCCTCGTTTTACTGGCGGATGAAGAACGAGCCGAGGAGAGCGGTGGACTGTGTGGTCAGAGCTCTGCACTTCTCTCCCAGGCAGCATAAGGATGTAGCTCTGGTGAACATGGCGAATATTCTGCACAGAGCTCACTTCTCCGCCGACGCCGCCATCCTGGCCCACGCTGCCCTGGACCTCACCACGGACCTGCTCACCAGCCACTACACCCTCGGCAACATCTACGCTatgCTGGGGGAATATAATCACTCGGTGCTGTGTTATGAGCAGGCTCTGCAGGCTCAGCCGGGGTTCGAGCAGGCTCTGCGCCGGAAACATGCGGTTCTTTGCCAACAGAAACTGGAGCAGCGCCTGGAGGCTCAGCACCGgtctcTGCAGCGCACTCTGAATGAACTGAAGGAGTATCAGAAGCAGCATGATCACTACCTGCGGCAGCAGAGCACTCTGGATAAACACAAGCTGATCCAGGAGGAGCAGATCCTCAGAAACATCATCCACGAGACCCAGATGGCCAAAGAGGCTCAACTCGgaAATCACCAGATGTGTCACCTGGGTCAACAGAACAGCCTGTTCTGCCCGTTCGACCTTCCCGTCCGCTACCACCGGGGGGACCTGTTCGAGAACGTGCACTACATCCAGtttggaGAGGAGGTGTCGGTGGCGAGCAGTGTGGCGATGGTGTCGGAGCTGATGGTGAACGAGAGCCGGAGTTCTCAGCTGTTCTCCTCCGTCTCTGGAGAGGAGGAGCCGGCGGCGCACTGGGGCAAAGACTCCGCCTCCTCCAATGAGgAGCCTCACAGCGTTTTGTGGCCCAGAAGATCAGACTGTGCCCAGCGATTCCCCTCTATACCCCCCTCCACCCAACTACCCACCTTCTTCCTCCCCCCAGAGAGCCAGGGCttcaggaCTCAGAGCAGCCTGTACGGGATCCGGAGCCCCCCGGGGTCCCTGCGGCCCCCAGACTGCGGCTCCAAACCTCAGCTCTCAGCCGGAGACCCCCTGTCCTCCGCCAGCGCCGCCACCGAGGGAAAACAGCTGCCCGACCAGCAGGCCACTCAGgTGCTGCTGAGGCGGAGTGGTGGGTGGAGTTTGGAGCAGACTGGAGCTTTAATAACTCATGCGATGGAGAAGATGAGTGTGCCGCGCTGGTTGCTGCAGAATGAGGCGGGTCTGTTCTGGCGGGCTCAGGGTAACGGTACTCGGGCTCTGCAGTGTTTGCGTCAGGCTCTGCACTCGGCGCCGCCGCAGCACCGCGGCATCCCGCTGGTGAACACCGCCAACCTGCTGCTGCACCACGGCTTACGCCGCGAGGCCCAGACCCTCCTGCAGCAAGCCCTGGAGCTCAACACCTCCGAGcccCACACCGTGCTGAGTATGGTGAATGTGCAGCTGACTCGGGGGAACCTGACGGGGGCGCTGGCGCTGTTCCGGCATGCCCTGTCTCTGAGTGCCGGCTGCAGCCAGTGCCGTGCCAGCCTGCCACTCCTGCGCTGCCTGCAGTTCTACCCCTTCCTCTACAACCTGCAGCACCAGCCCTGCCAGCAGGGTTCGGGCTGTGAtaaggaggtggaggaggaggtggaggtggaggactGGGAGGCGGGTGCTGAGGGGAAGCAGCACACCGTGAGCGGTGACGCTATGCCGGGCTCCACCCTGGAGGACTCACTACTGTTCGAGAAGGTGGTGGTGGACAGTAACGGTTCAGGTGAGGTGGGGCAGCAGGAGCGAGGCGGGGAGGAGAAGAGGGCGGGgctggagggggaggaggaCTGGAGGCTGAGAGAGGAGCTGATTGGAGCTCTGGATATGAGCGGGAAGCGAGGAGACCTGCGGGGGATCCGAGTCCTGAAGAACGATGGGGTGATGGGAGCTAAGAGCGGCGGGCCGTGTTTCGGTAACTGTGAGGAGGACGATGGAGCGGAGTGGATCACATTTCAGGTGAAGCGAATGAGAAAGCCGAAGTCTGACTCTGCGGAGGGCTGGGCTGGAGACGAGGACTTTCCTCAGACTGAGTCTTTACCTGGACACTCCTCCATCCTGGAGATCAGCGGACCTACTATCCCCTCACCTGGACCTTCAGGGAGGTGGAGGGACTACAGCAGTCTGGGGTGGCCCGGCCCGGAGGAGTGCCAGCGCACGCGGCGGGTCGACCTGACCACCGTCGCCAGCACCTGGCTGGCAGTCTCCGCCAAGAATATAGAtataACGGAGCATATAGATTTTGCGACGCCGCTGCAGGAACCCGCTGTGGAGCCGGTGTGTAACGCTAACCTGCCCGCAAGTATGCATACATTAGACCACCTGGGGGGCGTGGCCAACCGCGGGAGTATCCACTACACAGGGGAGAGCCAGCTGAAAGAGGTGCTGCAGAACCTGGGGAAGGATAATTTCTCACCTCAGTCCTTCGAGCAGGTGGGCACACGCATCGCCAAGGTGCTGGAGAAGAATCAGACGTCGTGGGTTCTGTCCAGTATGGCGGCGCTGTACTGGAGGGTTAAAGGTCAGGGTAAGAAGGCGGTGGACTGTCTGCGGCAGGCTCTGAACTACGCTCCTCACCACATGAAGGACGTCCCGCTGATCAGCCTGGCTAACATCTTCCAGAACGCTCGTCTGTGGGGGGACGCGCTGACCGTCGCCCGCATGGCCGTGGAGATCGCCCCTCACTTCGTCGTCAATCATTTTACTCTGGCGAACGTTTACATAGCCATGGAGGAGTTTGAGAAGGCGATGAGATGGTACGAGTCCACTCTCAAACTGCAGCCCGAGTTCGGTCCGGCTAAAGACCGACTCCGTACCATCCAGTGCTACCTCCTCACCAAGCGGGACCGCCGCACTCCctgaacacacaccacacacacacacacacacctacatctacacacacattcagattcAGAACGTCTTCATCTGTAAAAGTCTTCATTTTGTCCATATATAAACATCATCTCGACCCGAGTCTGATTTAAACCAGTGACTGATTATAAACTGCAGAGGATCCGGTTCAGTTCAGGAGAAACACAGACAGAATTATTCACCATGATTTCAGGCAGAAATCAGCCAGATTCAGTCAGTGCAGTAAAAACCAGAGGAGGAGCCAGATTCACCTTCACCCACTCGTTTACTGataatcagtgtctcagactgccttcattgagtttagaGCCTAACCCACCAATAGCAGAGCAGCTTTTTCCTTTTATATATCCAGTTTCTCCCGTATCCAGTCTTAACTACACTCAACATTATGGCCATTTTACCCTAACATCAGTCagagttatttaaaaataaagtgtaaaaaactTACATACGGattgtttatactgtttatactgcAACCAACAGCCTAATAACACCACATGatcaataatattattaatgattaaacaCAGCTCGTCTACAACTCAGCAGATAAACTCCAGATAAAGCAGATTATTACATTAATCTGCGCTCGCATTATTTGTAGTAATTATATATCAGAAGAAGGTTataaactgatttttggggGAAATTACATGtgctaatattataattattatatcagCACTGAGAAAAACTACCTGCTGGAACTGTTTGGATGCTGAAGATGGAAAGATTTCAGAGTTTAGAGGAGAAAAAtttgacaaagtgggcggggctgttttgtcattgaaacatataaaaatgggcggagctacacatcatacaTCTTACTGGAACCAGCCAGTAGAGGCGCTAGACTAGACCTGTGGCAGCTTCACCTTTAAGagactttatttaaatacagtcaCTGGTTTAAATAGACGAGTATCttgtttttaaagatatttaatgtcagttttattatttttattgattttatggtttttattgattttagagTTTTTATGCAAGGTTTTTTAACCAACATGCTgctttaaaaagagaaagaaaaggatttAAAGTCTTCCAGCTGCTGGATAAACAGATATTTCTACCTTAAACTGCTGTAACACTGATCTTAATATCAGATTATTGGATAAAGTAAGAGTTGAACAGAttggttgattaattgattaattgtgaGAAACACAAATTATTAGAACTGGTTTATCTGAAGTGAGACGGTTCAGGGAGAAAATGGTAAAGTAAGAAatacaaaaagtattttttttaaagtagaagGAGAGTCTTCAGACATTCGGCCAAATATTGTGGTTAAAtcagtttaatataattatCTACTCGTATAAATAGattaaactgagatttttgctttaattatatatttgataATTCGATTATAATCAGATCTGTATGAAAAGGGAAAACCTGATTTCGGTTAATAAGGAAATGTTTGGACAGTGTGGATGGGTTAAAGGGAAAtggagattatttttttattaagcaaatatttaataaactgcCCTGTTCTTCACCctgacagtaataataataataactataacGGCAGGTTTATAGGCGTAAATAAGGTTCATTGATTGTAAACCGGTTAGTTTGTATCTGGTGTGAACACGATTCTGGAGCGTAAATTTGTGCAGAGTGTACGATATCAGTTCTGCGTTTCGGTTTCTTGTATAGAACAGTTTATagtatagactgtatataagagTGGACTCTTAACACCTCTTATACTCTTTATTACTCACTGTAAACATTTAAACCCCGCCCATATTTCTGGgtggaagccccgccccctgtcTCTATACTGGAATTGTACACTGACTGAACTCGTCTTTCatcaaaaattataaaaaaaaaa

Function

symbol description
ttc17 Involved in actin filament polymerization and cilium organization. Acts upstream of or within determination of heart left/right asymmetry. Predicted to be located in actin cytoskeleton; cytoplasm; and plasma membrane. Is expressed in female organism. Orthologous to human TTC17 (tetratricopeptide repeat domain 17).

NR:

description
tetratricopeptide repeat protein 17-like

GO: NA

KEGG:

id description
K24931 TTC17; tetratricopeptide repeat protein 17

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022665291.1 True 5530 mRNA 0.52 25 167671 190488

Neighbor

gene id symbol gene type direction distance location
vps33b vps33b,LOC106587690 coding upstream 13923 138255 ~ 153748 (+)
hypk hypk,LOC107596440,LOC107695358 coding upstream 41083 124276 ~ 126588 (+)
LOC103024613 dh12b,hsd17b12b,LOC108414037,LOC107757588,LOC107701268,LOC107695363,LOC107730274 coding downstream 42318 232806 ~ 261021 (+)
LOC111191160 NA coding downstream 293282 483770 ~ 499002 (+)
LOC103040103 hrasb,hras,LOC107596435,LOC103357265,LOC107562835 coding downstream 498769 689257 ~ 701417 (+)
LOC103023516 brsk2b,LOC108444143,LOC107600443,LOC107730259 coding downstream 674745 865233 ~ 950940 (+)
LOC111191156 NA coding downstream 1036104 1226592 ~ 1229189 (+)
G298880 NA non-coding upstream 20978 145976 ~ 146693 (+)
G298868 NA non-coding upstream 32455 134716 ~ 135216 (+)
G298875 NA non-coding upstream 52122 115335 ~ 115549 (+)
G298866 NA non-coding upstream 69001 98447 ~ 98670 (+)
G298864 NA non-coding upstream 71376 95930 ~ 96295 (+)
G298890 NA non-coding downstream 20470 210958 ~ 212769 (+)
G298903 NA non-coding downstream 105715 296203 ~ 331116 (+)
G298997 NA non-coding downstream 249425 439913 ~ 440117 (+)
G299003 NA non-coding downstream 280374 470862 ~ 473103 (+)
G299006 NA non-coding downstream 308727 499215 ~ 499615 (+)
prc1 prc1 other upstream 1574 154965 ~ 166097 (+)
G298859 NA other upstream 88991 78480 ~ 78680 (+)
LOC111191161 NA other upstream 100484 52791 ~ 67187 (+)
G299000 apip other downstream 271926 462414 ~ 470620 (+)
G299046 NA other downstream 514672 705160 ~ 706824 (+)
G299226 NA other downstream 1027321 1217809 ~ 1218106 (+)
G299236 NA other downstream 1133932 1324420 ~ 1324854 (+)
LOC103047296 NA other downstream 1372350 1562838 ~ 1567078 (+)

Expression


Co-expression Network