vps33b (vps33b,LOC106587690)


Basic Information

Item Value
gene id vps33b
gene name vps33b,LOC106587690
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172830.1
NCBI id APWO02000048.1
chromosome length 5891159
location 138255 ~ 153748 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022665292.1
GCTGTAACGGGTCCGTGCGGAAACAAACTGCTCTGAATTCCATTTCTTCCGGAAACGGGGAGGAGGTGAGGCAGCTGCTGCGGCTGCAGTGAGGGGGCGCTGTGCTGGGTGTCTGATGGCTCAGTCAGGGAGGAGAGACGCTCCGGAGCTTCCGGACTTTTCCCTGCTGAAGAGACTGGCCCGGGACCAGCTCATCTACCTGCTGGAACAGcTGCCGGGGAGGAAGGACTTGTTTATCGATGCTGATCTGATGAGTCCACTCGACCGAATAGCCAACGTCACCACGCTAAAGcaacatgaagtggATAAATTATATAAAGTGGAGCTGAAGCCGATCGTCAGCACTGCAGATCAgcTCTGCTTTTTGATACGACCTCGGATACAGACAGTAAAATGGATCTCAGATGTAGTTAACCTGGATAAGGCAGCTGGAAGATTGAGAAGATATAAGATCATATTTACCCCTCAGAAGTTCTACGCGTGTGAGGCGGTTCTGGAGGAGCAGGGGGTGTTCGGGGATGTGACGTGTGATGAATGGGCTTTTTATCTCCTCCCGCTGGATGATGACATCATAAGTCTGGAGCTTCCTGAGTTCTTCAGAGAGAATTTTCTGgaggggGATCAGCGGTGGGTGGGCGCGGCCGGCGGTGCGTTACGGCTGATTCACTCTCTATACGGACCTTTCTCTAAGGTTTATGGGATTGGGCAGTGCGCCAAGATGGTGTACGAGTCGTGGAGGGAGCAGGTGGAGGACGGAGAGCAGAAAACTCAGCAGCCTGAGATCGGAAACGTTTTCCTGATCGACAGAGACGTGGACTTCATCACGCCGCTGTGCTCTCAGGTCGTATACGAGGGACTGGTGGACGATATTTTCAGGATTAAATGTGGAAGTGTGGAGTTCGGTCCTGAGGTCACTTCCTCTGATAAGAGCATTAAAGTGATGCTGAACTCTCAGGATAAGGTGTTTAATGAGATCAGAAACGAACATTTCTCCAACGTATTCGGCTTTTTGAGTCAGAAAGCTCGGAATCTGCAGACGGCGTACGACAAACGGAGAGGGATGGATATCCAGCAGATGAAGGCGTTCGTATCGGAGGAGCTGAAAGGCCTGAAACAGGAGCATCGTCTCCTCAGCCTGCATATCGGCGCGAGTGAATGCATAATgaagaagaaaacaaagcaAGACTTCCAGGAACTACTGAAAACTGAACACTCTTTACTGGAGGGTTTCGAGGTTCGGGAGTGCGTCTCCTTCATTGAAGAACACATTAACCGACAGATATCAATGATTGACAGTCTGAGACTCCTCTGCCTGCTGTCTCTCACAGAAAACGgACTTCTCCCTAAAGATTATCGCTCGCTAAAGGCTCAGTACCTGCAGAGTTATGGTATCGAGCACCTGCTGACCTTCTCTAACCTGAAGCAGATGGGTTTACTGGTGGAGCAGCAGCCTGGAGAAACGCTGACCGTCATGGAGAGTAAAGTGGGGAAACTGGTGAATGATAAAACTGCTGGAAAGCTGACGGATGCGTTTTCCTCTTTGGCGAAGAAGAGTAACTTCCGAGCTCTGAGTAAACGCCTGGTTCTGATCCCTAAATCAGGAGAGGAGTATGACCTGCGCGTCCCGCGAGATATGGCCTACATCTTCAGCGGGGCGTACGTCCCCCTCAGCTGCAAACTCATCGAACAGGTGTTGGAGCGAGACGGCTGGACCGGGCTGGAGGAGATCACCCGCATGCTGAACGGACACGAGTTTGCAGTATCAGGAGGAGCCAACGGGACTGAATCCAGAATTAAAGCTGATTCTCAGAGGATCGTTCTGGTGATGTTTCTGGGAGGATGCACTTACTCTGAAATCTCCGCTCTGAGATTCCTCGGACGAGAGAGAGGTTATAAGTTTATCGTGGTGACCACAGCCATCACTAACAGCGGCCGGCTCCTGGAGGCTCTACTGGATAATCACCCCTGACCCGGCACTGGTTCCAGTTCATTAACATATCTGCAGGTCACGGGAGGGCGGAGTCAGGCCTGACTGCAGGACGTGATGGAGAAGAACCACAGAGACTTATTTTCTCAACGGATGGATATAAATACCATTACTGACCTACAGCACTACAGATCCTGTATCAGTGTACAGATTGTGTATTGGTGAATATCGCACGTCTCTGAGTGTGTCTTGGACATGGACAGATTGTGAATCTGGTGAACGGACCGTATGCTCTTGTAAAAATGCTTCTCATGCTCTGATTTGAATGTGATCAGTTTACTGTTCTCTGtaaaataaactgttatttgatttttt
>XM_022665293.1
TCTCCTCGCTATAGGATCTCTGTTCTGCAGTGTGCGCCGCTGTAACGGGTCCGTGCGGAAACAAACTGCTCTGAATTCCATTTCTTCCGGAAACGGGGAGGAGGCGGCTGCAGTGAGGGGGCGCTGTGCTGGGTGTCTGATGGCTCAGTCAGGGAGGAGAGACGCTCCGGAGCTTCCGGACTTTTCCCTGCTGAAGAGACTGGCCCGGGACCAGCTCATCTACCTGCTGGAACAGcTGCCGGGGAGGAAGGACTTGTTTATCGATGCTGATCTGATGAGTCCACTCGACCGAATAGCCAACGTCACCACGCTAAAGcaacatgaagtggATAAATTATATAAAGTGGAGCTGAAGCCGATCGTCAGCACTGCAGATCAgcTCTGCTTTTTGATACGACCTCGGATACAGACAGTAAAATGGATCTCAGATGTAGTTAACCTGGATAAGGCAGCTGGAAGATTGAGAAGATATAAGATCATATTTACCCCTCAGAAGTTCTACGCGTGTGAGGCGGTTCTGGAGGAGCAGGGGGTGTTCGGGGATGTGACGTGTGATGAATGGGCTTTTTATCTCCTCCCGCTGGATGATGACATCATAAGTCTGGAGCTTCCTGAGTTCTTCAGAGAGAATTTTCTGgaggggGATCAGCGGTGGGTGGGCGCGGCCGGCGGTGCGTTACGGCTGATTCACTCTCTATACGGACCTTTCTCTAAGGTTTATGGGATTGGGCAGTGCGCCAAGATGGTGTACGAGTCGTGGAGGGAGCAGGTGGAGGACGGAGAGCAGAAAACTCAGCAGCCTGAGATCGGAAACGTTTTCCTGATCGACAGAGACGTGGACTTCATCACGCCGCTGTGCTCTCAGGTCGTATACGAGGGACTGGTGGACGATATTTTCAGGATTAAATGTGGAAGTGTGGAGTTCGGTCCTGAGGTCACTTCCTCTGATAAGAGCATTAAAGTGATGCTGAACTCTCAGGATAAGGTGTTTAATGAGATCAGAAACGAACATTTCTCCAACGTATTCGGCTTTTTGAGTCAGAAAGCTCGGAATCTGCAGACGGCGTACGACAAACGGAGAGGGATGGATATCCAGCAGATGAAGGCGTTCGTATCGGAGGAGCTGAAAGGCCTGAAACAGGAGCATCGTCTCCTCAGCCTGCATATCGGCGCGAGTGAATGCATAATgaagaagaaaacaaagcaAGACTTCCAGGAACTACTGAAAACTGAACACTCTTTACTGGAGGGTTTCGAGGTTCGGGAGTGCGTCTCCTTCATTGAAGAACACATTAACCGACAGATATCAATGATTGACAGTCTGAGACTCCTCTGCCTGCTGTCTCTCACAGAAAACGgACTTCTCCCTAAAGATTATCGCTCGCTAAAGGCTCAGTACCTGCAGAGTTATGGTATCGAGCACCTGCTGACCTTCTCTAACCTGAAGCAGATGGGTTTACTGGTGGAGCAGCAGCCTGGAGAAACGCTGACCGTCATGGAGAGTAAAGTGGGGAAACTGGTGAATGATAAAACTGCTGGAAAGCTGACGGATGCGTTTTCCTCTTTGGCGAAGAAGAGTAACTTCCGAGCTCTGAGTAAACGCCTGGTTCTGATCCCTAAATCAGGAGAGGAGTATGACCTGCGCGTCCCGCGAGATATGGCCTACATCTTCAGCGGGGCGTACGTCCCCCTCAGCTGCAAACTCATCGAACAGGTGTTGGAGCGAGACGGCTGGACCGGGCTGGAGGAGATCACCCGCATGCTGAACGGACACGAGTTTGCAGTATCAGGAGGAGCCAACGGGACTGAATCCAGAATTAAAGCTGATTCTCAGAGGATCGTTCTGGTGATGTTTCTGGGAGGATGCACTTACTCTGAAATCTCCGCTCTGAGATTCCTCGGACGAGAGAGAGGTTATAAGTTTATCGTGGTGACCACAGCCATCACTAACAGCGGCCGGCTCCTGGAGGCTCTACTGGATAATCACCCCTGACCCGGCACTGGTTCCAGTTCATTAACATATCTGCAGGTCACGGGAGGGCGGAGTCAGGCCTGACTGCAGGACGTGATGGAGAAGAACCACAGAGACTTATTTTCTCAACGGATGGATATAAATACCATTACTGACCTACAGCACTACAGATCCTGTATCAGTGTACAGATTGTGTATTGGTGAATATCGCACGTCTCTGAGTGTGTCTTGGACATGGACAGATTGTGAATCTGGTGAACGGACCGTATGCTCTTGTAAAAATGCTTCTCATGCTCTGATTTGAATGTGATCAGTTTACTGTTCTCTGtaaaataaactgttatttgatttttt

Function

symbol description
vps33b Acts upstream of or within intrahepatic bile duct development. Predicted to be located in late endosome membrane and lysosomal membrane. Predicted to be part of CORVET complex. Predicted to be active in lysosome. Is expressed in gut; liver; and pancreas. Human ortholog(s) of this gene implicated in arthrogryposis multiplex congenita; arthrogryposis, renal dysfunction, and cholestasis 1; cholestasis; and kidney disease. Orthologous to human VPS33B (VPS33B late endosome and lysosome associated).

NR:

description
PREDICTED: vacuolar protein sorting-associated protein 33B-like isoform X1

GO:

id name namespace
GO:0006904 vesicle docking involved in exocytosis biological_process
GO:0035622 intrahepatic bile duct development biological_process
GO:0015031 protein transport biological_process
GO:0005765 lysosomal membrane cellular_component
GO:0031902 late endosome membrane cellular_component

KEGG:

id description
K23281 VPS33B; vacuolar protein sorting-associated protein 33B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022665292.1 False 2302 mRNA 0.50 24 138293 153748
XM_022665293.1 True 2326 mRNA 0.50 24 138255 153748

Neighbor

gene id symbol gene type direction distance location
hypk hypk,LOC107596440,LOC107695358 coding upstream 11667 124276 ~ 126588 (+)
ttc17 ttc17,LOC107600454,LOC107695362 coding downstream 13923 167671 ~ 190488 (+)
LOC103024613 dh12b,hsd17b12b,LOC108414037,LOC107757588,LOC107701268,LOC107695363,LOC107730274 coding downstream 79058 232806 ~ 261021 (+)
LOC111191160 NA coding downstream 330022 483770 ~ 499002 (+)
LOC103040103 hrasb,hras,LOC107596435,LOC103357265,LOC107562835 coding downstream 535509 689257 ~ 701417 (+)
LOC103023516 brsk2b,LOC108444143,LOC107600443,LOC107730259 coding downstream 711485 865233 ~ 950940 (+)
G298868 NA non-coding upstream 3039 134716 ~ 135216 (+)
G298875 NA non-coding upstream 22706 115335 ~ 115549 (+)
G298866 NA non-coding upstream 39585 98447 ~ 98670 (+)
G298864 NA non-coding upstream 41960 95930 ~ 96295 (+)
G298858 NA non-coding upstream 63621 73214 ~ 74634 (+)
G298890 NA non-coding downstream 57210 210958 ~ 212769 (+)
G298903 NA non-coding downstream 142455 296203 ~ 331116 (+)
G298997 NA non-coding downstream 286165 439913 ~ 440117 (+)
G299003 NA non-coding downstream 317114 470862 ~ 473103 (+)
G299006 NA non-coding downstream 345467 499215 ~ 499615 (+)
G298859 NA other upstream 59575 78480 ~ 78680 (+)
LOC111191161 NA other upstream 71068 52791 ~ 67187 (+)
prc1 prc1 other downstream 1217 154965 ~ 166097 (+)
G299000 apip other downstream 308666 462414 ~ 470620 (+)
G299046 NA other downstream 551412 705160 ~ 706824 (+)
G299226 NA other downstream 1064061 1217809 ~ 1218106 (+)
G299236 NA other downstream 1170672 1324420 ~ 1324854 (+)

Expression


Co-expression Network