LOC103042748 (LOC103042748,LOC108426910,LOC105898201,LOC104922853)


Basic Information

Item Value
gene id LOC103042748
gene name LOC103042748,LOC108426910,LOC105898201,LOC104922853
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 11085455 ~ 11089687 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>NM_001320208.1
GACTGCAGCATTTTGCTTCAGCCATGTCTCATACTGCTGTGCAGGGTAGTGTCGGGAGCCATTCTGCCATGGGGATGAGCAGCCACAAAATATGTCTGTTCGAGTGCGAGAACTTCCAAGGTCGCAGGATGGAGATAAGCGGGGAGTGTCGCAATATCTGTGAGAAGGGCCTCTGTCGCGTCCGCTCCATCAGAGTGGAATGTGGACCCTGGGTGGGTTATGAGCAGCAGAACATGTGCGGTGAGATGTTTATTTTGGAGAGAGGAGAGTACCCTCGCTGGGACACCTGGTCCAACAGCTACCGCTGCGATTGCTTCATGTCCGTCAGGCCAATTCGCATGGACCCACAAGATCATAAGATCTGTCTATTTGAGTGTATGAACTTTGACGGCCGTAAGATGGAGGTCTGCGATGAAGACATCCCCAGCCTGTGGTCTTATGGCTTCCAAGACAGAGTTGCTAGCATTCAAGTCACCGGCGGAACGTGGGTTGGGTACCAGTATCCCGGCTATCGAGGATACCAGTACCTGTTCGAGTTTGGCCCCTTCAAGCACTGGAACGATTGGGGTGCCAACCACCCCCAGATCCAGTCTCTCCGTCGAGTGAGGGACATGCAGACACATCGCCGAGGCTGCTTTGATATGATTGCATAATGGACACGGCAGGGACTGACGTATGGCGCAagaagaggctctgtgtgaacaaATCATCTCAATTCATCTCTTGGCATCTGCAGAGCCATTCAGAACA

Function

NR:

description
beta-crystallin B1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001320208.1 True 750 mRNA 0.53 6 11085455 11089687

Neighbor

gene id symbol gene type direction distance location
LOC103043417 NA coding upstream 586094 10486486 ~ 10499361 (+)
LOC103043114 NA coding upstream 845635 10226770 ~ 10239820 (+)
LOC103042389 LOC108444298 coding upstream 893111 10174281 ~ 10192344 (+)
LOC103041662 NA coding upstream 1079144 9991573 ~ 10006311 (+)
LOC103041157 NA coding upstream 1114140 9909552 ~ 9971315 (+)
unc119 unc119,LOC103043060,LOC107704800,LOC107548572,LOC107713212 coding downstream 2470 11092157 ~ 11116667 (+)
LOC111195540 cdkl1,LOC108424097 coding downstream 168054 11257741 ~ 11258661 (+)
ankmy2 ankmy2,ankmy2a,LOC107582236,LOC107586949,LOC107704763,LOC107683262,LOC107730870 coding downstream 206882 11296569 ~ 11303882 (+)
sostdc1 sostdc1 coding downstream 225285 11314972 ~ 11319136 (+)
ispd ispd coding downstream 230676 11320363 ~ 11364325 (+)
G2860 NA non-coding upstream 14511 11070035 ~ 11070944 (+)
G2856 NA non-coding upstream 87356 10997768 ~ 10998099 (+)
G2854 NA non-coding upstream 90646 10994593 ~ 10994809 (+)
G2844 NA non-coding upstream 193335 10837441 ~ 10892120 (+)
G2836 NA non-coding upstream 301315 10783804 ~ 10784140 (+)
G2896 NA non-coding downstream 71728 11161415 ~ 11161630 (+)
G2902 NA non-coding downstream 179218 11268905 ~ 11269166 (+)
G2907 NA non-coding downstream 191569 11281256 ~ 11281961 (+)
G2918 NA non-coding downstream 222694 11312381 ~ 11312608 (+)
G2970 NA non-coding downstream 434958 11524645 ~ 11536611 (+)
LOC103039705 gdpd5b,gdpd5,LOC103039705,LOC108433002,LOC108277648,LOC107666190,LOC107682503 other upstream 1341964 9634093 ~ 9743491 (+)
G2509 NA other upstream 1415330 9631865 ~ 9670125 (+)
lyrm9 lyrm9,LOC102789908 other upstream 2128063 8944461 ~ 8957392 (+)
G2358 LOC108432992,LOC101077340,LOC100691215,LOC101465674 other upstream 2350503 8732723 ~ 8734952 (+)
G2304 NA other upstream 2524977 8560066 ~ 8560478 (+)
LOC103029949 slc46a1 other downstream 168759 11258446 ~ 11279177 (+)
G2910 sarm1,LOC107756984 other downstream 198444 11288131 ~ 11288846 (+)
meox2 meox2,LOC103024054,LOC107683451,LOC107730826,LOC107582293,LOC107588208,LOC107704718 other downstream 315856 11405543 ~ 11424451 (+)
G3096 NA other downstream 834763 11924450 ~ 11927250 (+)
G3313 sept5b,LOC108425237 other downstream 1892938 12982625 ~ 12984269 (+)

Expression


Co-expression Network