LOC103026740


Basic Information

Item Value
gene id LOC103026740
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 5171375 ~ 5244187 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU2210
GGAATAGGTTTCCATAacctcacatcaccaaacacagtgCAGCGGATACTTCTGTTATTATGGTGTGACTTAAGCCCTAATCACTGTTTCACTTACTACAGGGAGAACCTGGAGGCATGGGGGATAGAGGCTGCCATGGACAGAcaGGCCCCATGGGTTCACTCGGCCCAAAAGGagggaaaggagagagaggagatccGGGTCCGGAGggtAAAGTTGGTAAAGATGGGCTTTGTGGAGAGTTTGGGTCTAATGGAGTTCCAGGAATGACAGGATCTGATGGACCCCCTGGTATTCCTGGTGCAAGGggagaTCGGGGTGATCTAGGTCCCAGGGGTCCTCCAGGAAGAGTCGATGTAAGAAATGAGATAACGAAAGGCCAAAGAGGACGTCCAGGTGCACCTGGATTACCGGGCCCACCAGGCAATCGAGGTAGGGAGCCA
>XM_022671285.1
GGGAGAACCTGGAGGCATGGGGGATAGAGGCTGCCATGGACAGAcaGGCCCCATGGGTTCACTCGGCCCAAAAGGagggaaaggagagagaggagatccGGGTCCGGAGggtAAAGTTGGTAAAGATGGGCTTTGTGGAGAGTTTGGGTCTAATGGAGTTCCAGGAATGACAGGATCTGATGGACCCCCTGGTATTCCTGGTGCAAGGggagaTCGGGGTGATCTAGGTCCCAGGGGTCCTCCAGGAAGAGTCGATGTAAGAAATGAGATAACGAAAGGCCAAAGAGGACGTCCAGGTGCACCTGGATTACCGGGCCCACCAGGCAATCGAGGAGACCCTATACCTGGAGACCCTGGGAGTCAGGGCCCCCCTGGCGGTAGAGGGTTGAAAGGGGACAAGGGTGAGCAAGGACCAAACACAGAGGGCCCCCAAGGACGAATTGGACTTCCGGGTCACCCAGGATTTGTTGGTGACCCTGGTCTTCCAGGACGCCCAGAATATTTTGAACGTTTTGGGCCTCAAGGGCGTAAAGGGGAGAAAGGCAGGCCAGGGCCCAAAGGAACTAAAGGAAGTTATGGAGAGCAAGGGGAACCGGGAGACATCTGTAGACTGTGCTATTTGTCAGAGGAGAAACCTGGTCCTCGAGGAATTCCTGGTGACCCTGGTCAACAAGGACCTCCCGGAAATGATGGACGTCAAGGCGATCCAGGACCACCGGGTAATAAGGGTTTGCTTGGTCTACCTGGTCTTTCGGGATCCTATGGCAATCCAGGAGCACCAGGGTGTCAAGGGCCCAAAGGAGATCGTGGCTTTATGAGTGGTTGTGGGCAGAAAGGGGACCCAGGTGACCCAGGGCCCAAGGGAAACCCTGGGAGGACTGGCAGGACTGGAGATCCAGGAGATCCAGGAGTTAAAGGCCCAATGGGAGAAAAAGGCAATCCGGGTTCCTTGGGGGGTAAGGGGGATCAAGGTTTCCCAGGCCTAAATGGACTGGCAGGACGTGTTGGACCAATGGGAGGACAGGGGTTCCCTGGCGTAGGACTGCCAGGTCCTCCTGGTGCAAAGGGCGATTTTGGTTGTGAGGGTCAAATGGGGAGACAAGGAGATCAAgGTGAGAAGGGAGAGCCTGGAACAGCCTACCCCACTCCTGGAGAAAGAGGACCACCTGGAATAAAGGGTCAACGGGGACAAAGGGGCCCGTCAGGGATTCCAGGAGCCAGTGGAAACCCAGGGCCACAAGGCCAACTTGGTCCAAAAGGCCAGAAGGGTCAGTCCTATGATGGAGGACCAGGATTTCCTGGATACAAAGGAGATAAAGGCTTGCAAGGTCGTCCAGGTGTTCCTGGTATTGGAAAAGTAGGTCGTCCAGGACCTTCAGGAGCACCTGGAATGCCAGGAGAGAAGGGTAATATAGGTTTTGGCCCTCCAGGGGCCATGGGCAGACAGGGTGTCCCGGGATGTGATGGAACACTTGGACCTATTGGTAACTCTGGTTGGCCAGGATGCACTGGATCTCGTGGACAGCAAGGGAGAGACGGAGCACCAGGGAGTCAAGGTGGACCAGGACCTGATGGCCCACCCGGGTTAATTGGCCCTCCTGGAGTTTGTTCTCCTGGATGTACTGGGAGTAAAGGACCCATGGGCGAGAATGGAAGACCTGGATTCCCAGGCCCCCCTGGATGTAAAGGTGAGCCAGGTGACCCTGGACAGCATGGGTCAGGTGTACTCGGTCCTTCAGGTCCAGTGGGAAAACCTGGGCCGAAGGGAGGATCTGGGGCATTTGGGCCAATTGGATCAAAGGGCTTCAAAGGGAGGGATGGAATGCCTGGCCCACAAGGCCCCCAAGGGAACCAGGGGCCTCCTGGGAGAAGTGGCCCTCCTGGACGTCCTGGATCCTGTGGCATTGCTGGATGTCCTGGGGATAAAGGTAACAGAGGAATTGATGGACCAACGGGTAACAGAGGTCTGCCAGGGCCTAAAGGAGACCCTGGAGCTCCAGGCTTTATAGGGCCGAGTGTTATTGTTGCAAACCCTGGAGATCCAGGAAATAGTGGAGACTTAGGTCCACCTGGCTTTCACGGTGACAAAGGTAACAAAGGAATGCCAGGACTTCCCGGAAACAGTGGTAAAAATGGGAATCCAGGCTGTGCAGGACAACCAGGTCCTCCTGGAGACCCAGGTACAAATGGGTGCCCTGGTGTACGTGGCCAGCCTGGCATTGAAGGAAGTATGGGAGACATGGGAGTGCCAGGTCCTGATGGTCCCAAAGGGATTACAGGCGCCAGAGGAGTACCAGGAGCTGATGGTATTCCGGGAGATGATGGACCAAAAGGAGACAAAGGCGATCCTAGCTTACCTGGACCAGGAGATCCTGGACGCCTTGGAGATAAGGGTGAGCCGGGCACTCCGGGCATTAAaggaagaaagggagagagaggctTAATGGGTTCTCCTGGTTGTCCAGGTGCTGATGGACCTTATGGAGCCAAAGGCGACATTGGACCACCTGGAACACCAGggcttccaGGGGTTGCTGGAGAAAGAGGTTTAGATGGAAATCCAGGACCCCAAGGATTTCCAGGACCACCAGGCCCCCCAGGTTGTTTGGGGTCACCAGGAAATCCAGGGCCTGCAGGTCAAAGAGGAGAAATAGGCAGAGACGGTATTCCTGGACCTCCTGGGCCAAAAGGAGAGAAAGGGGTTCCTGGATATGGACAGTCTGGAGCACCTGGTGTTAAGGGTGAAAAAGGGCGTAAGGGGGATCCTGGGCTACAGGGCCCCCCCGGACCACCAGGATGGTGTGGAGCAGTGGGAGACCCAGGAAGCAGTGGCCCACCAGGACCCCAGGGGATTCGCGGGAATCCTGGTGCTAAAGGATTATGTGTAGATGGACCAAAGGGAGAACGAGGTTTCCCAGGACAACCAGGAAGACCAGGGTGCCTAGGTCCTCCAGGTCCTCCAGGGCCTCCTGGGCCAGGACAAAAAGGTGATAAGGGTGACCCTGGGCCTTTAGGACAGACAGGACCTTCTGGTAGCACAGGAAACTCTGGCCCGCCGGGGCCTCCAGGTAGAGATGGGATTAATGGTTATCCTGGAAGCAAAGGAGAAATGGGGCCAAAGGGACTACCTGGACCACAGGGTGAGCCAGGAGACTGTGGGAATAACGGAGGCCGTGGTCTTCAAGGACCAAATGGACCACCAGGCGGACCGGGTGAAAGAGGAAGAGATGCATACTCCAGAAGGACTCCCATCCCAGGAGATCAGGGTCTACCTGGAGGTCCAGGGAATAGAGGAATGGGCGGAGATTATGGTCCACCTGGTCCACATGGTCTAGaagGACGCAAAGGGCAGAAAGGAAAAAGTGGCAGAGAAGGCATGCCTGGTCCTCCGGGTAACCGTGGATACAATGGGGACAGAGGGTTAACAGGGTTACAGGGAGCTCCAGGTTTTGATGGCCCTCCAGGTCAGAAGGGAAGAAGGGGCCCAGCAGGAAATAGAGTCAATGACAGCTTCCTGTTCACCAGACACAGCCAAAGACAAAATGTGCCACAGTGTCCATCAGGATCACAGCTAATCCACTCGGGATATTCACTGCTTTTTATCAACGGAAACAACCAGGGACACGGGCAAGACCTTGgaaCTTTGGGGAGCTGTCTACAAAGGTTCTCCACAATGCCCTTCCTTTTCTGCAACAGCGACAGCACCTGTCACTACGCCTCTCGCAACGACTACTCCTACTGGCTGTCCACCGAAGTGCCCATGTCCAAAGATGCGCCCCCGATCTCCGAAGGTTTTATACAGCAGTACATCAGCAGgTGTTCGGTGTGTGAGGCTCAGTCTAATGTAATAGCAGTGCACAGCCAGACCATTTCTGTTCCTGACTGTCCCAGCGGCTGGGAGCCTCTGTGGCAAGGCTACTCTTTTGTCATGCAAACTGGTGTGGGTGCAGAGGGCTCAGGACAGCCTCTGTCCTCACCTGGTTCCTGTCTGGAGAATTTCCAAAAGGTCCCATTCATCGAATGCCACGGCCGTGGCACCTGTAGCTTCTACACCGATTCTTATAGCTACTGGTTGGCAGCTCTGGATCCAACGCTGATGTTCAGtaaACCCAACCCAAAGACACTGAAAGATGACTGCCAACAAAGAATCATCAGCCGCTGTCGGGTCTGCATGAAGCAGAAGAGATGCCGTTAGAGAAAATCAACTGATAACACACTTCGTACTATATACAGAATACATCGAGGTGTAACGTTACTATAGACTCAGAATCAGCCCTCACATCTTTCTGATTTGTACTGGATCGGATTCTGCTCACCCACTCTGCAGCGAGGGTCTTGACGGAGGGGCTTCATGTGCTGTGAGGGCGCTATGAGGAAGTGAAACGGGAgtaacttgaaaataatggaCTTGTTATGACAACACTGTAATGAACCTTCTTTACCTGTGGGTCAAAGCACTTGATGTGAACGAGCCTAATGAAAAAGCCATGTATTACTGACTAATCTAAGGTGCTTTACACGGTAGCTAAAAACCACTTGCTgcaaacctttttttctttaaatgtggGCCAGTATTGACAGTATTCTAGTGTGTTCTATATTTAAGCCTgatattaacacatttttgcttttataacagtttcaatatgtttttttggtaCTTTTATCTTAAGAAGATAGATTGCAGATGATACAGCAGAGGGGTTACTGTGTCTGGCATGCTTCATATTGTTTAATTCAGACTGCATTAACCTCTGATCAGCTTGCTCAGTAAAATATCCTAAATACTTGGTATAGGAATAACCTGCATATCTGCGGCACTTATATTGATAAAAAGTCAAGGTATAATAAtgcacattaataaattaagattGGCCATCTCACAGTATTGTTTGCTATTAAAGCCATGGTCAGAGCACAGGCTGCATCCCAGTCATGAAAAGATATAGAACTATTAGATAAATTCTCTACACTGATATGATGTTTTAACTTGCATTGTGGAATAAAATTGCGTTGTCCATTGAAACCACAAACAAATATCTGGTATATAGAGTATATGTAATGGATATTTATGAAAACTCATCTTTACCATACTGCATTCTACTTCACATACTCTAATATATCAAATAATCAGTATTACTAATCAGTATTACTAATCAGTTTGCAATTAGGATGTAGCCATAcactatatataaacaaaactgttcgggaatctgtctctactgtccactCCAGctaatccccaactccacaatgCATCCTAAAAGAAATATtggccaataggttcatgttcatCTGCCTTAAAAAGATTCTATTTGCAGTACTTCTCAACAGGcaataaataagattttttttttgcatatataacatgtgttatatgttatatgacATATAACATACCTGAAAGTTTTGCTATCTGATctatttttgtatatgtatatattaattgcATTTTTGTACACTGCACAGTTCTATAAAAATATGTCTGACTTGGTGTTTATGTATGTAATGGTGCTACTCTGGATCAGTGCATTGTCTTCAGTACAATCAAGGATACTTTTGGATTTAATATAAACTGACTGACTGCA

Function

GO:

id name namespace
GO:0008519 ammonium transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2210 False 443 TUCP 0.56 6 5171375 5177312
XM_022671285.1 True 5588 mRNA 0.50 38 5171475 5244187

Neighbor

gene id symbol gene type direction distance location
LOC111192937 NA coding upstream 5936 5102073 ~ 5165439 (+)
rhbdd1 NA coding upstream 205145 4952575 ~ 4966230 (+)
nyap2 nyap2,nyap2a,LOC107704744,LOC107730860,LOC107751997 coding upstream 322063 4791244 ~ 4849312 (+)
trnav-aac NA coding upstream 423095 4748208 ~ 4748280 (+)
rrp8 rrp8,LOC107577195,LOC107582664 coding upstream 1021663 4134566 ~ 4149712 (+)
LOC103030600 si:dkey-260j18.2,LOC103030600,LOC108442862,LOC108278347,LOC105903253,LOC107758546,LOC107561384 coding downstream 46919 5291106 ~ 5297970 (+)
slc5a2 slc5a2,LOC107678242 coding downstream 64368 5308555 ~ 5322555 (+)
coq8b coq8b,LOC108442867 coding downstream 91694 5335881 ~ 5359350 (+)
numbl numbl,LOC106612624,LOC101482557,LOC108247327,LOC102206931 coding downstream 117016 5361203 ~ 5451916 (+)
LOC103027419 dpf1,LOC107672425,LOC107561370,LOC107749650 coding downstream 257032 5501219 ~ 5595495 (+)
G1530 NA non-coding upstream 48567 5112412 ~ 5122808 (+)
G1449 NA non-coding upstream 92376 4764470 ~ 5078999 (+)
G1503 NA non-coding upstream 138664 5030375 ~ 5032711 (+)
G1500 NA non-coding upstream 142723 5028080 ~ 5028652 (+)
LOC111194066 NA non-coding upstream 144474 5025809 ~ 5026901 (+)
G1641 NA non-coding downstream 41078 5285265 ~ 5285522 (+)
G1640 NA non-coding downstream 54150 5298337 ~ 5299877 (+)
G1638 NA non-coding downstream 56472 5300659 ~ 5301218 (+)
G1637 NA non-coding downstream 57186 5301373 ~ 5303078 (+)
G1639 NA non-coding downstream 59317 5303504 ~ 5305214 (+)
G1127 LOC107669897,LOC107733923,LOC107558818 other upstream 1184647 3981824 ~ 3986728 (+)
kcne4 NA other upstream 1374827 3794819 ~ 3796548 (+)
G1045 NA other upstream 1721733 3448476 ~ 3449642 (+)
G853 NA other upstream 2391493 2779505 ~ 2779882 (+)
LOC103034128 csnk1g2,LOC106925954,LOC106953035,LOC107722536,LOC103468226,LOC107718129,LOC104921814 other upstream 2561218 2568371 ~ 2610157 (+)
LOC111192942 NA other downstream 6297 5250484 ~ 5276988 (+)
pnkp pnkp,LOC107749649,LOC107672387,LOC107561379,LOC107758514 other downstream 436839 5681026 ~ 5703183 (+)
rwdd3 rwdd3 other downstream 1164659 6408846 ~ 6414794 (+)
LOC103030091 ptbp2,ptbp2b,LOC103030091,LOC108442283,LOC107594658,LOC107718150,LOC107570490,LOC108277987 other downstream 1268957 6513144 ~ 6554450 (+)
G2304 NA other downstream 3315879 8560066 ~ 8560478 (+)

Expression


Co-expression Network