pnkp (pnkp,LOC107749649,LOC107672387,LOC107561379,LOC107758514)


Basic Information

Item Value
gene id pnkp
gene name pnkp,LOC107749649,LOC107672387,LOC107561379,LOC107758514
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 5681026 ~ 5703183 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU2373
ACATAATATCATCCCATCATTCCTTGCACAGATACGTAGACGTCAGTCGGAAAGCTGGTGTTCCCTGCCGGTGCTTCAACTTTACTGCCTCTCTGGAACAATCAAAGCATAACAACAGGtTCCGTGAGATGGTTCCCTCAGCCACTAAGCATGCTCCTGTCAATGACATGGTGTTTCACAGCTACAAGAATAAATTTGCAGCTCCTTCTCTGTCTGAAGGCTTCTCTGAAATCCTGCAGATCCACTTTGTGCCTAGTTTTTCAGACAGTCGATCTGAGGCTCTTTTTAGGCAGTTTTCAGAGGGTTGAGGTCAATCGCAGGACAAAATCCCACAGATTGATATCCAGTACCTTTGGACTTTACATCCTAAACAGAATTGTGACTATACTAAGTAGGTTTAGACAATGTAAGTGGCTAGAGAAACATAATTGTCTAGTATATGATCTATGGGAATATAAATCTATGAGATCAAAAACTGAATCACCAGGGATGAACTGTGTTGAATGGACGCCTACTGAAATTCTTTGCTgctaagaacaaaaaaaagaaaatgaaaaaataataattgaaggGTATGTTTACTTTggttataaatattacattgtattaattagcatggaacatttttttacttgttgtttggtaaa
>XM_022671302.1
ATGGGAAGTGAGCGAGGGCTGGATTGGGACTGAGTGGGCTGTTGAATGGGACGCGTTGTGTAGCTGTTTAGATAGTTTGTTAGCCGACTAACTATTATccttgttttctgtcttttttaaaGTCTTGAAGGCGTTTTAAAGTCGTAATCTGGTCAGTGCGCTGTTTCGCGTTTGGCTGGTTGCTGGTCGTAGAGCGTAGGGAACAGATAAGTAAACGAGCGCACTCCTCGGAATGAAGTGTGCACTACTGAGTCCCTCAGGAGCCCGGGTGGAGCTGTGTGATGGACGCGCCCTGATCCTGGGTCGGGGTCCTGAGTCTGGAGTGAAGGATAAACAGTGTTCCAGACATCAGGTCAAGCTTGTGGCTGACTTCTCCAAACAGGAAGTTCTTGTAACACAGCTTGGTCCTAACCCGTCGTCTCTGGACGGTCAGGCGCTGGGCCGGGGTCAGTCCGGATATCTCACCGCGAGCGGGACGCTTCACCTGGTGAATCAGAGTCACCTGTTCACTGTGCAGTTTACCGGCACTGCCACTGGAGTCAGGGATCACCTGAGCAGAGCAGCGGAGAAACCTGTGGTCAAGAGGAGCATCCAGGACTTCTTTGGCTCCTCCCCTAAAAAGTCAACAAAAAGGCCAATTAGCACAGAAGAGAACGTGTCCAGCAGTAAACGTGGACGTACTGagaactcagatgaggaggaggacgagggtCTGGCAGAAGAAAAGCTCAGGCAGCTGCAGGAAATGGCACAGAAAGTGACGCCTGGGTCTTCCCCTTTAAAACCAGCCGCCGCTCCCACCACTGCGTCCTCGGCCTGCCCTCAGAGTCACTGGCAGCAAATAGGCAACCTCATGCTGTACACGGCTGCAGGCGTCACCGCGAGCTCCAAGATCGCCGGGTTCGATATTGATGGCTGCATCATCACTACAAAGTCAGGGAAAGTGTTTCCTACAGCTCCAGATGACTGGAGGATCCTTTTCCCAGAGATACAGCCCAAACTGGCCTCTCTGTTAAAGAAAGGGTTCAAGGTGGTGTTTTTCACCAATCAGTTGGGTATTGCTCGAGGGAAGCTCAGACCTGAAGTGTTCAAGtcgaaggttgaggacattctTCAGACACTAAAACTACCTGTGCAGGTGTTTGTTGCTGCAGGTCCAGGTATTTACAGGAAGCCTGTAATAGGAATGTGGGAACACTTACGCGAGAAGGCTAATGATGGAGTGACTGTAGACACATCCCAGAGCTTCTATGTTGGAGaTGCTGCAGGGCGTCCTGTGAACTGGGCTCCagggaagaagaaaaaggattTCTCCTGCAGTGACCGGCTGTTTGCTCTGAACCTTGGTCTGAAGTTTTCCACTCCTGAAGAGTTCTTCCTGGGCTGGAAAGCTGCTCCCTACAACATGCCATCATTTAATCCAAGGGAGCTGGACTCAAAGGCTCGTCTCTATGATCCTCCTGATGCCTCACTCACGTCTATCAGACAGGAAGTCATAGTTGCTGTTGGGTTCCCCGgagCTGGCAAATCCACCTTCTTCCACACCCATGTCATCCCAAAGGGCTATGTATATGTGAACAGGGTGAGTATAAAAAGGTTACCACTGACTGCACACACAaaagctctttttatatCCAGTCATGTGAATAAGTGTAAAATGTTGCTATTCAGCATTTTTATTCTATTAGCATTTTGCTTACCGTGGTTTGGGGTTAAAATtatgctgctgtttttgttcaGAAACATAATATCATCCCATCATTCCTTGCACAGATACGTAGACGTCAGTCGGAAAGCTGGTGTTCCCTGCCGGTGCTTCAACTTTACTGCCTCTCTGGAACAATCAAAGCATAACAACAGGtTCCGTGAGATGGTTCCCTCAGCCACTAAGCATGCTCCTGTCAATGACATGGTGTTTCACAGCTACAAGAATAAATTTGCAGCTCCTTCTCTGTCTGAAGGCTTCTCTGAAATCCTGCAGATCCACTTTGTGCCTAGTTTTTCAGACAGTCGATCTGAGGCTCTTTTTAGGCAGTTTTCAGAGGGTTGAGGTCAATCGCAGGACAAAATCCCACAGATTGATATCCAGTACCTTTGGACTTTACATCCTAAACAGAATTGTGACTATACTAAGTAGGTTTAGACAATGTAAGTGGCTAGAGAAACATAATTGTCTAGTATATGATCTATGGGAATATAAATCTATGAGATCAAAAACTGAATCACCAGGGATGAACTGTGTTGAATGGACGCCTACTGAAATTCTTTGCTgctaagaacaaaaaaaa

Function

symbol description
pnkp Predicted to enable double-stranded DNA binding activity; polydeoxyribonucleotide 5'-hydroxyl-kinase activity; and polynucleotide 3'-phosphatase activity. Predicted to be involved in DNA repair and nucleotide phosphorylation. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease type 2B2 and microcephaly, seizures, and developmental delay. Orthologous to human PNKP (polynucleotide kinase 3'-phosphatase).

GO: NA

KEGG:

id description
K08073 PNKP; bifunctional polynucleotide phosphatase/kinase

RNA

RNA id representative length rna type GC content exon number start site end site
TU2373 False 647 TUCP 0.50 3 5700924 5703183
XM_022671302.1 True 2288 mRNA 0.48 17 5681026 5703082

Neighbor

gene id symbol gene type direction distance location
LOC103031751 NA coding upstream 24971 5631396 ~ 5656055 (+)
LOC103026943 LOC103026943,LOC108278393 coding upstream 62190 5613743 ~ 5618836 (+)
LOC103027419 dpf1,LOC107672425,LOC107561370,LOC107749650 coding upstream 85531 5501219 ~ 5595495 (+)
numbl numbl,LOC106612624,LOC101482557,LOC108247327,LOC102206931 coding upstream 229110 5361203 ~ 5451916 (+)
coq8b coq8b,LOC108442867 coding upstream 321676 5335881 ~ 5359350 (+)
LOC111194277 NA coding downstream 614122 6317305 ~ 6327911 (+)
LOC103031157 LOC108442282,LOC107594665,LOC107710606,LOC107700523 coding downstream 678603 6381786 ~ 6405982 (+)
LOC103037029 NA coding downstream 1243640 6946823 ~ 6961558 (+)
LOC103041009 NA coding downstream 1312125 7015308 ~ 7020982 (+)
LOC111194639 NA coding downstream 1459063 7162246 ~ 7167800 (+)
G1702 NA non-coding upstream 238886 5439217 ~ 5442140 (+)
G1692 NA non-coding upstream 309174 5371341 ~ 5371852 (+)
G1639 NA non-coding upstream 375812 5303504 ~ 5305214 (+)
G1637 NA non-coding upstream 377948 5301373 ~ 5303078 (+)
G1638 NA non-coding upstream 379808 5300659 ~ 5301218 (+)
G1837 NA non-coding downstream 82643 5785826 ~ 5786057 (+)
G1873 NA non-coding downstream 224974 5928157 ~ 5928697 (+)
G1897 NA non-coding downstream 630006 6333189 ~ 6334080 (+)
G1902 NA non-coding downstream 647328 6350511 ~ 6351012 (+)
G1916 NA non-coding downstream 714140 6417323 ~ 6417565 (+)
LOC111192942 NA other upstream 404038 5250484 ~ 5276988 (+)
LOC103026740 NA other upstream 436839 5171375 ~ 5244187 (+)
G1127 LOC107669897,LOC107733923,LOC107558818 other upstream 1694298 3981824 ~ 3986728 (+)
kcne4 NA other upstream 1884478 3794819 ~ 3796548 (+)
G1045 NA other upstream 2231384 3448476 ~ 3449642 (+)
rwdd3 rwdd3 other downstream 705663 6408846 ~ 6414794 (+)
LOC103030091 ptbp2,ptbp2b,LOC103030091,LOC108442283,LOC107594658,LOC107718150,LOC107570490,LOC108277987 other downstream 809961 6513144 ~ 6554450 (+)
G2304 NA other downstream 2856883 8560066 ~ 8560478 (+)
G2358 LOC108432992,LOC101077340,LOC100691215,LOC101465674 other downstream 3029540 8732723 ~ 8734952 (+)
lyrm9 lyrm9,LOC102789908 other downstream 3241278 8944461 ~ 8957392 (+)

Expression


Co-expression Network