G1897


Basic Information

Item Value
gene id G1897
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 6333189 ~ 6334080 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU2529
caaattttaaataaatattgtaccGATGCTAAAGAAAGAACATAACCTAAATTAATACTTCAACTAAAACAAACTCAGCAAACACACAGCATCATTCTCATCAAAAGTCCACTGTTCAAATTAATAAAACGACAAAGGTGTGACATTTTCCAAATATGAAATTGacatttcagttcaaaacaaaacTCAGCAAACACACAGCAATGAAATGTATAAAAGAGCTGACAAATTAATATGACAACTCTGCCAAATCAACAAGAATGGGACTAAAAGAGCAGTTATCAGTCTCATCAAAGTCCACTGTTCAAATCCCTAAAAGTGTGACACTTCCCAAATATCAAATGTCTGCTATATGAGATATGTAACgaaaattgctgatccgaacaaccaatgatttataaaggaaaagtATGAATGACCTTGAGGAGGCTTTGTGCTTCTTGCACCAGAGCTGTGGTCTTAATTTTAATGATTAGTACTGCTGGTTTATCTGTTGGTATATTTCACTGACACTGGTCATTAGCGACATTGGCTTGGGGATAACCAAAATCTACAGTGAGGATTATCATAAGAAAAATGAACTGGTGAGCTCACTTTTTACAAAGGGACCTGAAGGCCAAGTAAAACATCCAATGCTGACGGCAAAAGAatcatcaggaaagaaaaatcTTCAATTGTCTGACAGATCCGAAACAGTCTTCAGCAGACTGTTGTAAGGGCTACCGGATTTTTCACACGATAATGCGCACCGTAttgtaaggcacactatcaatgaatgtctattttatggtctatgtcagtggttcccaacctatgggtcgcgacccaacctatgggtcgccaaagatccacgatgggtcacgaagccctct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2529 True 872 lncRNA 0.34 2 6333189 6334080

Neighbor

gene id symbol gene type direction distance location
LOC111194277 NA coding upstream 5278 6317305 ~ 6327911 (+)
LOC103031751 NA coding upstream 677134 5631396 ~ 5656055 (+)
LOC103026943 LOC103026943,LOC108278393 coding upstream 714353 5613743 ~ 5618836 (+)
LOC103027419 dpf1,LOC107672425,LOC107561370,LOC107749650 coding upstream 737694 5501219 ~ 5595495 (+)
numbl numbl,LOC106612624,LOC101482557,LOC108247327,LOC102206931 coding upstream 881273 5361203 ~ 5451916 (+)
LOC103031157 LOC108442282,LOC107594665,LOC107710606,LOC107700523 coding downstream 47706 6381786 ~ 6405982 (+)
LOC103037029 NA coding downstream 612743 6946823 ~ 6961558 (+)
LOC103041009 NA coding downstream 681228 7015308 ~ 7020982 (+)
LOC111194639 NA coding downstream 828166 7162246 ~ 7167800 (+)
LOC103039155 NA coding downstream 847702 7181782 ~ 7188573 (+)
G1873 NA non-coding upstream 404492 5928157 ~ 5928697 (+)
G1837 NA non-coding upstream 547132 5785826 ~ 5786057 (+)
G1702 NA non-coding upstream 891049 5439217 ~ 5442140 (+)
G1692 NA non-coding upstream 961337 5371341 ~ 5371852 (+)
G1639 NA non-coding upstream 1027975 5303504 ~ 5305214 (+)
G1902 NA non-coding downstream 16431 6350511 ~ 6351012 (+)
G1916 NA non-coding downstream 83243 6417323 ~ 6417565 (+)
G1941 NA non-coding downstream 155283 6489363 ~ 6517105 (+)
G1942 NA non-coding downstream 200381 6534461 ~ 6537245 (+)
G1945 NA non-coding downstream 224316 6558396 ~ 6565619 (+)
pnkp pnkp,LOC107749649,LOC107672387,LOC107561379,LOC107758514 other upstream 630006 5681026 ~ 5703183 (+)
LOC111192942 NA other upstream 1056201 5250484 ~ 5276988 (+)
LOC103026740 NA other upstream 1089002 5171375 ~ 5244187 (+)
G1127 LOC107669897,LOC107733923,LOC107558818 other upstream 2346461 3981824 ~ 3986728 (+)
kcne4 NA other upstream 2536641 3794819 ~ 3796548 (+)
rwdd3 rwdd3 other downstream 74766 6408846 ~ 6414794 (+)
LOC103030091 ptbp2,ptbp2b,LOC103030091,LOC108442283,LOC107594658,LOC107718150,LOC107570490,LOC108277987 other downstream 179064 6513144 ~ 6554450 (+)
G2304 NA other downstream 2225986 8560066 ~ 8560478 (+)
G2358 LOC108432992,LOC101077340,LOC100691215,LOC101465674 other downstream 2398643 8732723 ~ 8734952 (+)
lyrm9 lyrm9,LOC102789908 other downstream 2610381 8944461 ~ 8957392 (+)

Expression


Co-expression Network